Detail information of GWHGAAZE025002


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCBI40073.31.17931E-46unnamed protein product [Vitis vinifera]
trEMBLtr|F6I5L3|F6I5L3_VITVI3E-47Putative uncharacterized protein {ECO:0000313|EMBL:CCB62231.1}
TAIR10AT3G56470.10.00002F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene5326699053268108+
GWHAAZE00000007mRNA5326699053268108+
GWHAAZE00000007exon5326699053268108+
GWHAAZE00000007CDS5326699053268108+
Transcript Sequence

Network for GWHGAAZE025002

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box31672.20E-05
PF03478.19DUF2952893362.90E-06
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.186
SRR3591706second leaf1.361
SRR3591707mature leaf3.883
SRR3591708Shoot apex3.335
SRR3591709Stem4.346
SRR3591710White floral bud3.909
SRR3591711White flower6.140
SRR3591712Green floral bud5.598
SRR3591713Yellow flower5.021
SRP173429 SRR8316895Juvenile bud stage 5.345
SRR8316896Juvenile bud stage 8.400
SRR8316897Juvenile bud stage 5.027
SRR8316894Third green stage 2.141
SRR8316900Third green stage 7.540
SRR8316901Third green stage 6.671
SRR8316898Complete white stage 1.398
SRR8316899Complete white stage 7.632
SRR8316903Complete white stage 3.725
SRR8316902Silver flowering stage4.176
SRR8316904Silver flowering stage5.034
SRR8316905Silver flowering stage2.128
SRR8316906Gold flowering stage 6.174
SRR8316907Gold flowering stage 6.381
SRR8316908Gold flowering stage 5.985
SRP132670SRR6706286Control2.520
SRR6706287Light intensity 50%3.215
SRR6706288Light intensity 20%3.183
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.238
CNS0095593Slightly white alabastrum(diploid) 210.446
CNS0095594Slightly white alabastrum(diploid) 310.320
CNS0095595Whole white alabastrum(diploid) 29.181
CNS0095596Whole white alabastrum(diploid) 38.453
CNS0095597Whole white alabastrum(diploid) 47.816
CNS0095598Silvery flower (diploied) 110.851
CNS0095599Silvery flower (diploied) 29.681
CNS0095600Silvery flower (diploied) 312.335
CNS0095601Golden flower (diploid) 114.679
CNS0095602Golden flower (diploid) 213.040
CNS0095603Golden flower (diploid) 314.157
CNS0095604Slightly white alabastrum(tetraploid) 112.418
CNS0095605Slightly white alabastrum(tetraploid) 210.553
CNS0095606Slightly white alabastrum(tetraploid) 312.863
CNS0095607Whole white alabastrum(tetraploid) 19.029
CNS0095608Whole white alabastrum(tetraploid) 28.214
CNS0095609Whole white alabastrum(tetraploid) 38.493
CNS0095610Silvery flower (tetraploid) 113.245
CNS0095611Silvery flower (tetraploid) 210.181
CNS0095612Silvery flower (tetraploid) 38.060
CNS0095613Golden flower (tetraploid) 111.581
CNS0095614Golden flower (tetraploid) 211.384
CNS0095615Golden flower (tetraploid) 312.026
CRA001975CRR073297Stem 16.260
CRR073298Stem 26.546
CRR073299Stem 30.477
CRR073300Leaf 110.805
CRR073301Leaf 28.765
CRR073302Leaf 30.461
CRR073303Juvenile bud 11.416
CRR073304Juvenile bud 20.118
CRR073305Juvenile bud 30.770
CRR073306Third green 10.178
CRR073307Third green 20.296
CRR073308Third green 30.135
CRR073309Second white 10.302
CRR073310Second white 20.736
CRR073311Second white 30.198
CRR073312Silver flowering 10.246
CRR073313Silver flowering 20.314
CRR073314Silver flowering 30.000
CRR073315Gold flowering 11.426
CRR073316Gold flowering 21.376
CRR073317Gold flowering 30.051
CRR073318Tawny withering 11.170
CRR073319Tawny withering 23.160
CRR073320Tawny withering 30.732