Gene detail

Detail information of GWHGAAZE025007

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003633790.2	4.05586E-33	PREDICTED: F-box/kelch-repeat protein At1g57790-like [Vitis vinifera]
trEMBL	tr\|F6I5L3\|F6I5L3_VITVI	2E-33	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB62231.1}
TAIR10	AT4G22660.1	0.005	F-box family protein with a domain of unknown function (DUF295)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	53370273	53372054	+
GWHAAZE00000007	mRNA	53370273	53372054	+
GWHAAZE00000007	exon	53370273	53370754	+
GWHAAZE00000007	exon	53370858	53371183	+
GWHAAZE00000007	exon	53371957	53372054	+
GWHAAZE00000007	CDS	53370273	53370754	+
GWHAAZE00000007	CDS	53370858	53371183	+
GWHAAZE00000007	CDS	53371957	53372054	+

Transcript Sequence
>GWHTAAZE025041 ATGGCCCGAACAAGAGACAATAACAGACGCAGGAAGTTGGGGAAACAAGCTAGCAGACCATGGGCTACACTTGCAGAGGACCTACTTATATTGATCATAATGCATCTAAAGTTCCCGGATTTCCTTTCCTTTGGACGTGTTTGTAGGTCATGGAGATCAGCAGCTGAAGCCCAAAGAAAAATTTTCCTTGCACCAAAACCCCCTTTTGTTGGCATTATATCATCATTTGCTAAGAAATCAATTTCTTTTAAAAATATATTTGAGGAGACCAGGTACAAGACAATGCTGCGTGACGTGAACTCTAAACTCTGCTTGGGATCATCTTGCGGATACCTGATGATGCTGGAGAGTGATTATAGACTTTGGCTTGTGCATCCTATTACTGGAAATGAATTCGTTTCCCTTCCCTTCGGTTCCTCGAGGAAATTAGTTCCCAATGTCGTGCTGTTCTTGTTTACTCACCCACGCTTTCTGGTTATCAAATCTAGCCTTTTCAAGGGTGCAATATATGTTTTAGCAACCAATTGCTTAATATATCAAGTGTCAGTGCAACGTTGTGGCATCATTTTCTTTCCAATGGAGGTCAAGTACACACCTTCTGTTTCAGGTTTGAATCTGCAGTTAGTGAGTTCAAACGAGCGACTCTTTGTGGTTGATTGTTATTCGGAGCTGAGATTACCTTTCGTTTACGAGGTGGATTTTGATAGCATGACCTGGGTGAGGACGTTGGACCTGGGTGACGAAGCAATTTTTTTGAGTGACTTGAAGTCTTCTTTTGTGGCTAACCCAACCAAGTGGGGAGCCCAAGGGCAGACTGATGTAGTGAGACTCAAACTTGGGTGTTCTCTGAATGAGGATCCTCTACCAACTGGGAAATCGCTCACGGTTTTGGTGATTGAAATCTGA

Network for GWHGAAZE025007

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	20	56	1.60E-05

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.727
	SRR3591706	second leaf	1.622
	SRR3591707	mature leaf	2.265
	SRR3591708	Shoot apex	3.157
	SRR3591709	Stem	3.172
	SRR3591710	White floral bud	3.141
	SRR3591711	White flower	4.385
	SRR3591712	Green floral bud	3.259
	SRR3591713	Yellow flower	4.127
SRP173429	SRR8316895	Juvenile bud stage	3.609
	SRR8316896	Juvenile bud stage	5.627
	SRR8316897	Juvenile bud stage	3.022
	SRR8316894	Third green stage	1.479
	SRR8316900	Third green stage	4.582
	SRR8316901	Third green stage	5.860
	SRR8316898	Complete white stage	1.041
	SRR8316899	Complete white stage	5.394
	SRR8316903	Complete white stage	2.476
	SRR8316902	Silver flowering stage	2.373
	SRR8316904	Silver flowering stage	3.300
	SRR8316905	Silver flowering stage	1.574
	SRR8316906	Gold flowering stage	3.751
	SRR8316907	Gold flowering stage	3.527
	SRR8316908	Gold flowering stage	5.025
SRP132670	SRR6706286	Control	3.369
	SRR6706287	Light intensity 50%	4.208
	SRR6706288	Light intensity 20%	4.487
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.630
	CNS0095593	Slightly white alabastrum(diploid) 2	7.060
	CNS0095594	Slightly white alabastrum(diploid) 3	5.848
	CNS0095595	Whole white alabastrum(diploid) 2	5.427
	CNS0095596	Whole white alabastrum(diploid) 3	4.869
	CNS0095597	Whole white alabastrum(diploid) 4	4.688
	CNS0095598	Silvery flower (diploied) 1	8.060
	CNS0095599	Silvery flower (diploied) 2	7.547
	CNS0095600	Silvery flower (diploied) 3	8.647
	CNS0095601	Golden flower (diploid) 1	7.684
	CNS0095602	Golden flower (diploid) 2	9.159
	CNS0095603	Golden flower (diploid) 3	7.744
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.975
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.331
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.980
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.160
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.114
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.938
	CNS0095610	Silvery flower (tetraploid) 1	11.085
	CNS0095611	Silvery flower (tetraploid) 2	7.875
	CNS0095612	Silvery flower (tetraploid) 3	4.722
	CNS0095613	Golden flower (tetraploid) 1	7.095
	CNS0095614	Golden flower (tetraploid) 2	8.647
	CNS0095615	Golden flower (tetraploid) 3	9.414
CRA001975	CRR073297	Stem 1	4.403
	CRR073298	Stem 2	3.880
	CRR073299	Stem 3	0.357
	CRR073300	Leaf 1	8.116
	CRR073301	Leaf 2	5.793
	CRR073302	Leaf 3	0.241
	CRR073303	Juvenile bud 1	0.416
	CRR073304	Juvenile bud 2	0.089
	CRR073305	Juvenile bud 3	0.650
	CRR073306	Third green 1	0.118
	CRR073307	Third green 2	0.329
	CRR073308	Third green 3	0.100
	CRR073309	Second white 1	0.183
	CRR073310	Second white 2	0.374
	CRR073311	Second white 3	0.376
	CRR073312	Silver flowering 1	0.047
	CRR073313	Silver flowering 2	0.268
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.395
	CRR073316	Gold flowering 2	0.861
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.855
	CRR073319	Tawny withering 2	1.929
	CRR073320	Tawny withering 3	0.704