Gene detail

Detail information of GWHGAAZE025019

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004248205.1	0	PREDICTED: putative GPI-anchor transamidase [Solanum lycopersicum]
COG	YP_501969.1	2E-24	Legumain
trEMBL	tr\|F6HVI6\|F6HVI6_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58699.1}
TAIR10	AT1G08750.3	4E-141	Peptidase C13 family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	53680103	53684434	+
GWHAAZE00000007	mRNA	53680103	53684434	+
GWHAAZE00000007	exon	53680103	53680113	+
GWHAAZE00000007	exon	53680190	53680231	+
GWHAAZE00000007	exon	53680370	53680514	+
GWHAAZE00000007	exon	53681248	53681477	+
GWHAAZE00000007	exon	53682122	53682179	+
GWHAAZE00000007	exon	53682827	53682904	+
GWHAAZE00000007	exon	53683050	53683165	+
GWHAAZE00000007	exon	53684016	53684199	+
GWHAAZE00000007	exon	53684291	53684434	+
GWHAAZE00000007	CDS	53680103	53680113	+
GWHAAZE00000007	CDS	53680190	53680231	+
GWHAAZE00000007	CDS	53680370	53680514	+
GWHAAZE00000007	CDS	53681248	53681477	+
GWHAAZE00000007	CDS	53682122	53682179	+
GWHAAZE00000007	CDS	53682827	53682904	+
GWHAAZE00000007	CDS	53683050	53683165	+
GWHAAZE00000007	CDS	53684016	53684199	+
GWHAAZE00000007	CDS	53684291	53684434	+

Transcript Sequence
>GWHTAAZE025053 ATGGTGTCAAGGTTTAATTATCGTCATATGGCCAATACTTTGTCCTTATACAGGACTGTAAAACGGCTAGGAATACCCGATGAGAGGATAATATTAATGTTGGCTTATGATATGGCTTGCAATGCTCGTAACAAGTACCCTGCACAAGTCTTCAACAATGAAAACCACCGGCTTAACTTGTATGGAGATAATGTTGAGGTGGATTATCGAGGTTATGAGGTGACCGTTGAAAACTTTTTCCGAGTTCTAACGGGGCGTCACCAGAATGCCGTTCCAAGGTCAAAACGTCTTCTCAGTGACGAAGGAAGTCACATACTGTTATACATGACAGGCCATGGAGGGGACGAGTTTCTAAAATTCCAGGACTCGGAGGAGCTGCAGAGTCATGATTTAGCTGATGCAGTTAAACAAATGAAAGAAAAGCGTAGATTTAAGGAGCTGCTGATTATGGTAGACACTTGCCAAGCTGCCACTCTCTTTTTTCAGCTTCAGTCACCAGGTGTTTTGGCTATTGGAAGTAGCATGAAAGGCGAAAACTCTTACTCACATCACTTGGATTCTGATGTTGGTGTCTCTGTCGTGGATCGTTTCACATTTTATACCCTTGCTTTCTTTGAGAGGCTAAATATGTATGACAATACTTCATTGAGCAGGTATTTTGAAATATCCCTCTACAAAATGTACCCCGTACCCGTGACGAACTTCTTTGGTTCGGTCATGGAAACGATTCATACCGATTCTGCTTATAGAGCCTTCTCAGGCAAAAACTCCAGCAGAGATAAAACCAAACTGCAATCTGATCAATCAGAGCGAAGAACAATTCTAAGTTCAGACATTCATCAACCAATTAGTGACTCAAAAAGGGATCAAAATGGTGGCTGCCCTTTTACACGGATGCGTGTAAATTTTCATGGGAAGATGGCAAAAATTGAAGATGTTGATAGCTTGGTGAACTATGGTTTGCTGATAATGTCAGTGCTGGTGACCGTTTTCAGTTGGCTATCATGA

Network for GWHGAAZE025019

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01650.19	Peptidase_C13	6	220	2.90E-39

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05290	PIGK	Metabolic pathways	map01100
K05290	PIGK	Glycosylphosphatidylinositol	map00563

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0008233	molecular_function	peptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.648
	SRR3591706	second leaf	0.798
	SRR3591707	mature leaf	0.515
	SRR3591708	Shoot apex	1.137
	SRR3591709	Stem	1.411
	SRR3591710	White floral bud	1.057
	SRR3591711	White flower	0.006
	SRR3591712	Green floral bud	0.455
	SRR3591713	Yellow flower	0.476
SRP173429	SRR8316895	Juvenile bud stage	5.551
	SRR8316896	Juvenile bud stage	6.809
	SRR8316897	Juvenile bud stage	1.258
	SRR8316894	Third green stage	1.688
	SRR8316900	Third green stage	3.324
	SRR8316901	Third green stage	3.671
	SRR8316898	Complete white stage	0.694
	SRR8316899	Complete white stage	2.780
	SRR8316903	Complete white stage	0.993
	SRR8316902	Silver flowering stage	0.661
	SRR8316904	Silver flowering stage	0.260
	SRR8316905	Silver flowering stage	0.471
	SRR8316906	Gold flowering stage	1.304
	SRR8316907	Gold flowering stage	0.693
	SRR8316908	Gold flowering stage	1.504
SRP132670	SRR6706286	Control	2.023
	SRR6706287	Light intensity 50%	2.718
	SRR6706288	Light intensity 20%	2.306
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.564
	CNS0095593	Slightly white alabastrum(diploid) 2	1.954
	CNS0095594	Slightly white alabastrum(diploid) 3	1.953
	CNS0095595	Whole white alabastrum(diploid) 2	1.794
	CNS0095596	Whole white alabastrum(diploid) 3	0.540
	CNS0095597	Whole white alabastrum(diploid) 4	1.059
	CNS0095598	Silvery flower (diploied) 1	2.663
	CNS0095599	Silvery flower (diploied) 2	2.865
	CNS0095600	Silvery flower (diploied) 3	1.342
	CNS0095601	Golden flower (diploid) 1	2.976
	CNS0095602	Golden flower (diploid) 2	2.364
	CNS0095603	Golden flower (diploid) 3	2.398
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.696
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.890
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.170
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.659
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.163
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.155
	CNS0095610	Silvery flower (tetraploid) 1	0.098
	CNS0095611	Silvery flower (tetraploid) 2	0.528
	CNS0095612	Silvery flower (tetraploid) 3	0.301
	CNS0095613	Golden flower (tetraploid) 1	0.107
	CNS0095614	Golden flower (tetraploid) 2	0.073
	CNS0095615	Golden flower (tetraploid) 3	0.183
CRA001975	CRR073297	Stem 1	3.969
	CRR073298	Stem 2	4.676
	CRR073299	Stem 3	1.266
	CRR073300	Leaf 1	3.264
	CRR073301	Leaf 2	1.685
	CRR073302	Leaf 3	0.680
	CRR073303	Juvenile bud 1	0.256
	CRR073304	Juvenile bud 2	0.041
	CRR073305	Juvenile bud 3	0.287
	CRR073306	Third green 1	0.079
	CRR073307	Third green 2	0.032
	CRR073308	Third green 3	0.014
	CRR073309	Second white 1	0.039
	CRR073310	Second white 2	0.088
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.072
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.104
	CRR073316	Gold flowering 2	1.999
	CRR073317	Gold flowering 3	0.059
	CRR073318	Tawny withering 1	1.040
	CRR073319	Tawny withering 2	2.653
	CRR073320	Tawny withering 3	2.489