Gene detail

Detail information of GWHGAAZE025039

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003521086.1	2.9667E-123	PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial-like isoform X1 [Glycine max]
COG	YP_618091.1	6E-41	enoyl-CoA hydratase/isomerase
Swissprot	tr\|Q8RXN4\|HIBC5_ARATH	3E-101	3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial (Precursor)
trEMBL	tr\|I1JMV6\|I1JMV6_SOYBN	1E-123	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G27150.2}
TAIR10	AT4G31810.1	4E-83	ATP-dependent caseinolytic (Clp) protease/crotonase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	54024207	54030571	+
GWHAAZE00000007	mRNA	54024207	54030571	+
GWHAAZE00000007	exon	54024207	54024329	+
GWHAAZE00000007	exon	54025984	54026068	+
GWHAAZE00000007	exon	54027189	54027274	+
GWHAAZE00000007	exon	54027707	54027828	+
GWHAAZE00000007	exon	54029135	54029195	+
GWHAAZE00000007	exon	54029331	54029429	+
GWHAAZE00000007	exon	54029750	54029791	+
GWHAAZE00000007	exon	54030452	54030571	+
GWHAAZE00000007	CDS	54024207	54024329	+
GWHAAZE00000007	CDS	54025984	54026068	+
GWHAAZE00000007	CDS	54027189	54027274	+
GWHAAZE00000007	CDS	54027707	54027828	+
GWHAAZE00000007	CDS	54029135	54029195	+
GWHAAZE00000007	CDS	54029331	54029429	+
GWHAAZE00000007	CDS	54029750	54029791	+
GWHAAZE00000007	CDS	54030452	54030571	+

Transcript Sequence
>GWHTAAZE025073 ATGGCCATTAATTATAGTACTGCTTTCATTTCCATGCAGGTGGCCATTCTGAATGGGATTACCATGGGTGGTGGGGCTGGAGTTTCAATCCCTGGGACATTTCGGCTTGCAACTGATAAAACGGTTTTTGCAACCCCTGAAACATTAATTGGTTTTCATACTGATGCTGGTGCATCGTTTTACCTCTCTCATCTTCCTGGTTATTTAGGAGAGTACTTGGCTCTAACAGGAGACAAACTCAACGGAGCAGAAATGATTGCCTGTGGACTTGCTACACATTATTCACCCTGTTCAAATCTTCCTTTAATTGAAGAACTACTTGGAAAACTGGTAACTGATGATCCTTCGGTCATTGAAACTATTCTAGACAAGTATGGTGAACTTGTCTATCCAGATAACGCAAGCGTAGTTCGAAGGATTGAATCAGTTGATAATTGTTTTAGACACGATACAGTTGAAGAAATTATTGATGCTTTGGAAAATGAGGCGAGTAAAACCCATGATATATGGTGCATTTCAACTCTAAAGAAACTAAAAGATGCTTCTCCATTGGGCTTGAAGGTTACATTGAAATCCGGGGTTCGGGCAAGGATGGTCGATAAAGATTATGCGCCAAAGTGGAACCCGCCAAGCTTGGAACAAGTATCGAATGATATGGTGGAAAATTATTTTTTGCCCCTCAGCGAAGTTGAGCCTGACCTAGACCTACCCACAAAGCAAAGAGAAGCATTCACCTAG

Network for GWHGAAZE025039

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16113.6	ECH_2	12	191	4.40E-56
PF16113.6	ECH_2	192	224	1.20E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05605	HIBCH	Metabolic pathways	map01100
		Carbon metabolism	map01200
		Propanoate metabolism	map00640
		Valine, leucine and isoleucine degradation	map00280
		beta-Alanine metabolism	map00410

Gene Ontology

GO term	Ontology	Name
GO:0003860	molecular_function	3-hydroxyisobutyryl-CoA hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.025
	SRR3591706	second leaf	15.857
	SRR3591707	mature leaf	13.533
	SRR3591708	Shoot apex	30.482
	SRR3591709	Stem	24.964
	SRR3591710	White floral bud	18.586
	SRR3591711	White flower	19.096
	SRR3591712	Green floral bud	25.624
	SRR3591713	Yellow flower	15.338
SRP173429	SRR8316895	Juvenile bud stage	24.715
	SRR8316896	Juvenile bud stage	37.228
	SRR8316897	Juvenile bud stage	18.136
	SRR8316894	Third green stage	13.149
	SRR8316900	Third green stage	24.373
	SRR8316901	Third green stage	28.219
	SRR8316898	Complete white stage	9.298
	SRR8316899	Complete white stage	24.990
	SRR8316903	Complete white stage	12.629
	SRR8316902	Silver flowering stage	8.046
	SRR8316904	Silver flowering stage	11.372
	SRR8316905	Silver flowering stage	4.433
	SRR8316906	Gold flowering stage	16.472
	SRR8316907	Gold flowering stage	16.509
	SRR8316908	Gold flowering stage	13.516
SRP132670	SRR6706286	Control	9.128
	SRR6706287	Light intensity 50%	9.200
	SRR6706288	Light intensity 20%	10.480
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	36.481
	CNS0095593	Slightly white alabastrum(diploid) 2	26.687
	CNS0095594	Slightly white alabastrum(diploid) 3	36.654
	CNS0095595	Whole white alabastrum(diploid) 2	26.019
	CNS0095596	Whole white alabastrum(diploid) 3	23.804
	CNS0095597	Whole white alabastrum(diploid) 4	23.177
	CNS0095598	Silvery flower (diploied) 1	24.687
	CNS0095599	Silvery flower (diploied) 2	16.698
	CNS0095600	Silvery flower (diploied) 3	10.218
	CNS0095601	Golden flower (diploid) 1	20.212
	CNS0095602	Golden flower (diploid) 2	11.794
	CNS0095603	Golden flower (diploid) 3	10.624
	CNS0095604	Slightly white alabastrum(tetraploid) 1	33.168
	CNS0095605	Slightly white alabastrum(tetraploid) 2	29.745
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.005
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.012
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.605
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.419
	CNS0095610	Silvery flower (tetraploid) 1	13.496
	CNS0095611	Silvery flower (tetraploid) 2	13.086
	CNS0095612	Silvery flower (tetraploid) 3	13.438
	CNS0095613	Golden flower (tetraploid) 1	11.156
	CNS0095614	Golden flower (tetraploid) 2	11.647
	CNS0095615	Golden flower (tetraploid) 3	7.376
CRA001975	CRR073297	Stem 1	12.017
	CRR073298	Stem 2	11.682
	CRR073299	Stem 3	4.285
	CRR073300	Leaf 1	12.609
	CRR073301	Leaf 2	10.388
	CRR073302	Leaf 3	5.523
	CRR073303	Juvenile bud 1	3.267
	CRR073304	Juvenile bud 2	2.246
	CRR073305	Juvenile bud 3	2.071
	CRR073306	Third green 1	1.442
	CRR073307	Third green 2	1.290
	CRR073308	Third green 3	1.943
	CRR073309	Second white 1	2.152
	CRR073310	Second white 2	1.707
	CRR073311	Second white 3	2.159
	CRR073312	Silver flowering 1	1.620
	CRR073313	Silver flowering 2	1.276
	CRR073314	Silver flowering 3	2.207
	CRR073315	Gold flowering 1	3.645
	CRR073316	Gold flowering 2	3.641
	CRR073317	Gold flowering 3	0.761
	CRR073318	Tawny withering 1	6.780
	CRR073319	Tawny withering 2	8.956
	CRR073320	Tawny withering 3	5.728