Gene detail

Detail information of GWHGAAZE025041

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ADP37985.1	0	carotenoid cleavage dioxygenase 7 [Actinidia chinensis]
COG	YP_007108471.1	2E-35	9-cis-epoxycarotenoid dioxygenase
Swissprot	tr\|Q7XJM2\|CCD7_ARATH	0	Carotenoid cleavage dioxygenase 7, chloroplastic (Precursor)
trEMBL	tr\|E3T3A3\|E3T3A3_ACTCH	0	Carotenoid cleavage dioxygenase 7 {ECO:0000313\|EMBL:ADP37985.1}
TAIR10	AT2G44990.1	2E-170	carotenoid cleavage dioxygenase 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	54038463	54051909	-
GWHAAZE00000007	mRNA	54038463	54051909	-
GWHAAZE00000007	exon	54051186	54051909	-
GWHAAZE00000007	exon	54048989	54049120	-
GWHAAZE00000007	exon	54046709	54046999	-
GWHAAZE00000007	exon	54046090	54046172	-
GWHAAZE00000007	exon	54045519	54045833	-
GWHAAZE00000007	exon	54040486	54040600	-
GWHAAZE00000007	exon	54039214	54039368	-
GWHAAZE00000007	exon	54038463	54038690	-
GWHAAZE00000007	CDS	54051186	54051909	-
GWHAAZE00000007	CDS	54048989	54049120	-
GWHAAZE00000007	CDS	54046709	54046999	-
GWHAAZE00000007	CDS	54046090	54046172	-
GWHAAZE00000007	CDS	54045519	54045833	-
GWHAAZE00000007	CDS	54040486	54040600	-
GWHAAZE00000007	CDS	54039214	54039368	-
GWHAAZE00000007	CDS	54038463	54038690	-

Transcript Sequence
>GWHTAAZE025075 ATGCCACTGCCGGCCAAGCTCCCTCCCGTGACCACCATCTCCATCTCCTTGACGGAGAAAGTATTGCCGGAAAAAGTATCGCAATCCATCTCAATTAGTGCGCCAACTCGCCCGGTCTCGACCCCAACCATAGTAGATGACTCAGTTTCTGCCTATTGGGACTATCAATTTTTATTTGTCTCACAACGGTCTGAGACCATTGATCCAATCACCCTTCGAGTAGTGGAGGGTGCGGTCCCTCCTGATTTTCCTCTCGGGACCTATTATTTGACCGGACCGGGACTATTCACTGACGATCACGGGTCCACAGTGCACCCATTAGATGGCCATGGCTATTTAAGAGCCTTTACAATTGATGGGGTCAAAGGAGAAGTCAAATTTATGGCCCGATACATTGAGACCGAGGCTCAGATTGAGGAACGGGACCCAGTGACCGGCAGCTGGCAGTTCAGTCACCGAGGCCCCTTCTCGGTCCTGAAAGGTGGGAAAAAGCTCGGAAATACCAAGGTAATGAAGAATGTTGCTAACACTAGCGTGTTGAGGTGGGGAGGGAGGTTGTTTTGCTTGTGGGAAGGCGGGACCCCTTACGAGATTGAATCCAGATCATTGAATACGGTCGGGAAGTTTGATGTGATCGATGGTGAAGATTCATCGCCCGGGGGAGGGTTCAGAATTGGTGATGTTTGGGATTTAGCTGCACAAATTTTGAAGCCAATACTATACGAATTTGACTCCAATTTCAAGTTGTTACAAAAGAGAGAATTCAACATACCAGATCATCTTATGCTTCACGACTGGGGCTTCACTGAAAATCATTACATTTTGTTTGGGAATCGCATCAAGCTTGATATTCCTGGATCAATGACAGCGGTATGTGGATTATCTCCAATGATAACAGCTCTGTCATTAAACCCCAGCAAGCCCACATCTCCCATTTATTTGCTCCCAAGATTTCCCAAAGAATCCAATAGTAATAATAATGGAGGTGAAGAGAGAGATTGGAAAGTAGCCATTGAAGCACCTTCTCAAATGTGGTTCCTACATGTTGGAAATGCCTATGAAGAGAAGGATCAAGACGGGAATTTGCAAATTCAAATTCAAGCTAGTGGTTGCTCTTACCAATGGTTCAATTTCCAGAAAATGTTTGGATATGACTGGGAAAGTGGTAAGCTAGATCCTTCAATGATGAATGCAGACGGTGGAGAAAAGTTATTGCCTCGCCTTGTTCAGGTGTCTATTAAATTTGATAGTGGTGGAAATTGCGAAAGATGTAGCGTGGATCTTTTAAATGAGTGGGACAAAACTACAGATTTTCCTATTATTAACCATCACCATTCTGGGAGACGAAATAAACACATTTACGCCGCAACTTCCTCTGGCTTGCGCAAAGCACTGCCACATTTTCCGTTTGATACAGTGGTGAAACTAAACACTGCAAATAACACAACTGCCACATGGTCTGTCGGTAGTCGGCGGTTCATCGGCGAGCCCATTTTTATCCCAAAAGGAATTGAGGAAGATGATGGGTACCTTCTCGTTGTAGAGTTGACGGCTCGTAAATGCCCAGAATGTGGTCAAGCCTTGCCTGAATCCTACCAACCCCCGGCTGATGAAGATTGGTCAACCGGAATTTTTGGTTGTATTGAAGATCCCGAAAGTTGCGGAATGACCCTTGCCGCACTTACGGCGCTCTTTCATGGCATGGATCCAGATACAACTTTGCTTATTTGCGAGGGCTTATTGTTTGCTTGGTGGGGCTGTGGTATCTATACTAGCATTGCTCGGCAAGCGCTGCAAAGACAATATCACCTAAAGGATGCACCCTGTGACCCATGCATGGTGCACTGCTGCTTGCACTGGTGCGCCCTGTGCCAAGAGCACAGGGAGATGAAGCTACATCTATCCGAGAACCTCATGCCCATAACCATTGTGGAGCCTCCACCGCTCCAAGCCATGAACGCAAGCCAGAACCGCGGGGGGTCCACTTCTTCATCATCGGGTAAAGATGCTGGGAAACCAGTGTTGGAAATAGTGCCTGTGTGA

Network for GWHGAAZE025041

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03055.16	RPE65	60	517	5.80E-76
PF04749.18	PLAC8	540	629	5.50E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K17912	CCD7	Biosynthesis of secondary metabolites	map01110
K17912	CCD7	Carotenoid biosynthesis	map00906

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016702	molecular_function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.350
	SRR3591706	second leaf	0.932
	SRR3591707	mature leaf	0.050
	SRR3591708	Shoot apex	2.049
	SRR3591709	Stem	2.850
	SRR3591710	White floral bud	9.111
	SRR3591711	White flower	2.501
	SRR3591712	Green floral bud	11.642
	SRR3591713	Yellow flower	2.768
SRP173429	SRR8316895	Juvenile bud stage	1.921
	SRR8316896	Juvenile bud stage	6.677
	SRR8316897	Juvenile bud stage	3.171
	SRR8316894	Third green stage	2.665
	SRR8316900	Third green stage	10.593
	SRR8316901	Third green stage	13.707
	SRR8316898	Complete white stage	0.251
	SRR8316899	Complete white stage	0.585
	SRR8316903	Complete white stage	0.300
	SRR8316902	Silver flowering stage	0.581
	SRR8316904	Silver flowering stage	0.544
	SRR8316905	Silver flowering stage	0.352
	SRR8316906	Gold flowering stage	0.969
	SRR8316907	Gold flowering stage	0.931
	SRR8316908	Gold flowering stage	0.899
SRP132670	SRR6706286	Control	5.203
	SRR6706287	Light intensity 50%	4.754
	SRR6706288	Light intensity 20%	4.719
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.473
	CNS0095593	Slightly white alabastrum(diploid) 2	7.944
	CNS0095594	Slightly white alabastrum(diploid) 3	14.028
	CNS0095595	Whole white alabastrum(diploid) 2	19.409
	CNS0095596	Whole white alabastrum(diploid) 3	24.044
	CNS0095597	Whole white alabastrum(diploid) 4	24.251
	CNS0095598	Silvery flower (diploied) 1	0.693
	CNS0095599	Silvery flower (diploied) 2	1.369
	CNS0095600	Silvery flower (diploied) 3	1.982
	CNS0095601	Golden flower (diploid) 1	1.178
	CNS0095602	Golden flower (diploid) 2	2.191
	CNS0095603	Golden flower (diploid) 3	2.901
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.784
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.987
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.300
	CNS0095607	Whole white alabastrum(tetraploid) 1	36.755
	CNS0095608	Whole white alabastrum(tetraploid) 2	34.768
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.644
	CNS0095610	Silvery flower (tetraploid) 1	1.304
	CNS0095611	Silvery flower (tetraploid) 2	3.290
	CNS0095612	Silvery flower (tetraploid) 3	2.809
	CNS0095613	Golden flower (tetraploid) 1	1.195
	CNS0095614	Golden flower (tetraploid) 2	2.466
	CNS0095615	Golden flower (tetraploid) 3	5.982
CRA001975	CRR073297	Stem 1	2.385
	CRR073298	Stem 2	3.336
	CRR073299	Stem 3	1.789
	CRR073300	Leaf 1	8.763
	CRR073301	Leaf 2	8.244
	CRR073302	Leaf 3	5.648
	CRR073303	Juvenile bud 1	8.289
	CRR073304	Juvenile bud 2	6.643
	CRR073305	Juvenile bud 3	0.454
	CRR073306	Third green 1	1.967
	CRR073307	Third green 2	2.662
	CRR073308	Third green 3	2.354
	CRR073309	Second white 1	1.205
	CRR073310	Second white 2	0.625
	CRR073311	Second white 3	0.511
	CRR073312	Silver flowering 1	2.053
	CRR073313	Silver flowering 2	1.507
	CRR073314	Silver flowering 3	0.361
	CRR073315	Gold flowering 1	2.919
	CRR073316	Gold flowering 2	0.187
	CRR073317	Gold flowering 3	1.195
	CRR073318	Tawny withering 1	3.375
	CRR073319	Tawny withering 2	2.485
	CRR073320	Tawny withering 3	3.543