Gene detail

Detail information of GWHGAAZE025042

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002274161.2	0	PREDICTED: chromodomain-helicase-DNA-binding protein 1-like isoform X1 [Vitis vinifera]
COG	YP_001878368.1	9E-49	Non-specific serine/threonine protein kinase
Swissprot	tr\|Q8RWY3\|ISW2_ARATH	8E-80	Putative chromatin-remodeling complex ATPase chain
trEMBL	tr\|F6GV79\|F6GV79_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43862.1}
TAIR10	AT2G44980.2	0	SNF2 domain-containing protein / helicase domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	54063245	54076095	+
GWHAAZE00000007	mRNA	54063245	54076095	+
GWHAAZE00000007	exon	54063245	54063425	+
GWHAAZE00000007	exon	54064565	54064660	+
GWHAAZE00000007	exon	54064936	54064986	+
GWHAAZE00000007	exon	54065147	54065307	+
GWHAAZE00000007	exon	54065414	54065545	+
GWHAAZE00000007	exon	54066072	54066252	+
GWHAAZE00000007	exon	54066590	54066725	+
GWHAAZE00000007	exon	54067241	54067358	+
GWHAAZE00000007	exon	54067893	54067982	+
GWHAAZE00000007	exon	54068950	54069153	+
GWHAAZE00000007	exon	54069979	54070104	+
GWHAAZE00000007	exon	54072526	54073181	+
GWHAAZE00000007	exon	54074242	54074387	+
GWHAAZE00000007	exon	54075382	54075546	+
GWHAAZE00000007	exon	54075835	54075916	+
GWHAAZE00000007	exon	54076065	54076095	+
GWHAAZE00000007	CDS	54063245	54063425	+
GWHAAZE00000007	CDS	54064565	54064660	+
GWHAAZE00000007	CDS	54064936	54064986	+
GWHAAZE00000007	CDS	54065147	54065307	+
GWHAAZE00000007	CDS	54065414	54065545	+
GWHAAZE00000007	CDS	54066072	54066252	+
GWHAAZE00000007	CDS	54066590	54066725	+
GWHAAZE00000007	CDS	54067241	54067358	+
GWHAAZE00000007	CDS	54067893	54067982	+
GWHAAZE00000007	CDS	54068950	54069153	+
GWHAAZE00000007	CDS	54069979	54070104	+
GWHAAZE00000007	CDS	54072526	54073181	+
GWHAAZE00000007	CDS	54074242	54074387	+
GWHAAZE00000007	CDS	54075382	54075546	+
GWHAAZE00000007	CDS	54075835	54075916	+
GWHAAZE00000007	CDS	54076065	54076095	+

Transcript Sequence
>GWHTAAZE025076 ATGAAGTACGAGGAGAGACTAATCGCGGCGGCGAAGTACGTGTCCGCCGGAGACTTAAGCGCCGGCGAGGTGCCGGTGAACCTAGAAGAAGTCGGAATAACGGCAAAGCTTAAACCTCACCAAGTGAAAGGAGTCTCATGGCTAATTCGCAGATACGTCCTCGGCGTTAACGTCATTCTCGCGCCACCAATAGTTCAGAAATCTCCTGAAAGTGTCAGTAAAACAGATTTCAGAGTGCACAAGTACAAAAGTAGAGTCCCAGTGACCAGTCCCTTGGATGGGACTGGGGAAGACCTTGCAGGCTATCTCTCTCTTGAGCTATTTGAAGTGATACTATGTCCTCTCAGTGTGACTGACGGCTGGGTATCAGAGGTATCCAATTTCGCAACTAAGTTAAGACTCCTTTCTTATGTTGGAGATAAGGAACATCGACGCAATTTACGTAGGAAAATGTATGAGCATGTAAACACAAAGTCCTTGTCATCTAATGTGCCATCTTTGCCTTTTGATGTGCTGTTGACTACATATGACATTATATTGATGGATCAGGATTTTCTCTCTCAAATTTCTTGGCACTATGCAATTATTGATGAAGCACAGCGGCTAAAAAATCCTTCTAGTGTGTTGTATAAAGTCCTTAGAGAACGTTTTGTGATGCCTAGACGTTTATTAATGACTGGCACACCTATTCAAAACAATCTTACAGAGCTTTGGGCTTTGATGCATTTTTGTATGCCTTCAGTCTTTGGGACATTGGAGCAGTTCCTTTCTACATTCAAGGAAGCTGGAGATCCTTCATCAGGTCATGACACAGCCAGAGTTAAGGAACAATATAAAATTTTAAAATATATATTGGGGGAATTTATGCTTCGAAGAACAAAATCTAAGCTTATCGAGTCAGGAACTCTTGTGTTGCCATCTCTTACTGAGATCACTGTGATGGCACCTTTGGTGGCCTTGCAGAAGAAGGTGTATATGTCTATATTGAGGAAGGAACTCCCTAGGCTTGTAGCACTCACTTCTGGTGCTTCTAATCATCAATCACTACAGAATATTGTAATACAGCTACGAAAAGCGTGCAGTCATCCATACCTTTTTCCTGGTATTGAGCCTGAACCGTACGAAGAGGGTGAACACATGGTCCAGGACTATATGGAGCTGAGGAAATATTCTTATGAGCGTCTTGATGGATCAATTCGAGCTGAGGAACGTTTTGCTGCAATTAGAAGTTTCAGTAGGCACTCAGCAAGAGGAGGTTTGAATTCTGAATCTGATCAAAACAGTGCATTTGTCTTTATGATTTCTACAAGAGCTGGCGGAGTTGGCTTGAATCTTGTGGCTGCTGATACAGTTATATTTTATGAGCAAGATTGGAATCCCCAGGTGGACAAGCAGGCACTGCAGCGTGCTCACCGTATCGGGCAAATGAATCATGTTCTGTCTATAAACTTAGTCAGCGGACGGTCAGTTGAGGAGGTTATCATGCGTAGAGCACAGAGGAAGTTGCAACTGAGCCATAATGTTGTAGGTGAAGATCTTACAGACTGTGAAGGGAAGGAAATGGCCGGAGCCGAATCTGGTGACCTACGATCTGTCATATTCGGTTTACATATGTTTGATCCAACTGAAATAACAAATGAAGTATCAGATCAATCTAATGTGCCTAAATTGAGTGCTATGGTGGATAAGGTAATTGCATTACGAAATGGAGAACAATCAGAAAAGGATGGGAGTAAGGTCGAGATCAATCCAGTGGAACTAAGAAGCGACCTTGATAATGGAAAAGGCCAGTCTTCTGTTTCTTTTGATCCGGGATTTGATGAAGCTTCATATCTCTCGTGGGTCGAGAAGTTTAAGGAAGTGGCGCAGTCGAAAGATTATACTGTGTTGGAGGTTGGAAGGAGGTACTTACCTGAGGAAAAGCATATGAAAGCAGAGGAAGTGAGGAATAAGGCACAGGAGAAGAAGTTGTTGAAGTGGGAAACTCTTGGATACCGTTCCCTTGCAGTAAAAGATCCTGTGGGCCCTGTTGATAGGGATATAATGTCTGATTCTGGTTCTGTTCATTTTGTTTATGGAGACTGTACACAGCCATCAAAAGTTTGTCCGTCTGAGCCGATAATTATATTTAGTTGTGTCGATGATTCTGGAAACTGGGGCAACGGTGGTCTGTTTGATGCACTGGCCAAACTTTCTGCAAAAGTCCCCAGTGCATATGAACAAGCTTCTGAATTCGGGGATCTTCATGTGGGTGATCTCCATCTTATTGAAGTTACAGAGGACTGTGATGAAGAGAGTAAAAATGATAATGCCTCACAATGGGTGGCTTTGGCGGTCGTACAATCCTACAATCCAAGGCGTAAAGTCCCACGTAGCAGCATCTCAATTTCTGATTTGGACCTTTGCCTGTCAAAAGCATCATTCTCAGCTGCTCAAAATGCTGCTTCAGTCCACATGCCACGAATTGGGTACCAGGATGGATCTGACCGCTCAGAATGGTATACCGTTGAACGTCTTCTACGAAAGTATTATTTTCGGCGTTCATCGCAAGGCTAG

Network for GWHGAAZE025042

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00176.24	SNF2_N	110	365	8.60E-39
PF00271.32	Helicase_C	383	474	3.90E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.879
	SRR3591706	second leaf	4.638
	SRR3591707	mature leaf	3.844
	SRR3591708	Shoot apex	9.981
	SRR3591709	Stem	5.087
	SRR3591710	White floral bud	6.639
	SRR3591711	White flower	8.411
	SRR3591712	Green floral bud	7.738
	SRR3591713	Yellow flower	8.037
SRP173429	SRR8316895	Juvenile bud stage	6.806
	SRR8316896	Juvenile bud stage	8.533
	SRR8316897	Juvenile bud stage	5.243
	SRR8316894	Third green stage	4.042
	SRR8316900	Third green stage	7.714
	SRR8316901	Third green stage	7.054
	SRR8316898	Complete white stage	2.813
	SRR8316899	Complete white stage	9.920
	SRR8316903	Complete white stage	3.392
	SRR8316902	Silver flowering stage	2.649
	SRR8316904	Silver flowering stage	4.915
	SRR8316905	Silver flowering stage	2.297
	SRR8316906	Gold flowering stage	7.181
	SRR8316907	Gold flowering stage	5.998
	SRR8316908	Gold flowering stage	8.344
SRP132670	SRR6706286	Control	6.112
	SRR6706287	Light intensity 50%	5.843
	SRR6706288	Light intensity 20%	6.567
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.060
	CNS0095593	Slightly white alabastrum(diploid) 2	10.217
	CNS0095594	Slightly white alabastrum(diploid) 3	6.631
	CNS0095595	Whole white alabastrum(diploid) 2	6.465
	CNS0095596	Whole white alabastrum(diploid) 3	5.571
	CNS0095597	Whole white alabastrum(diploid) 4	5.383
	CNS0095598	Silvery flower (diploied) 1	9.612
	CNS0095599	Silvery flower (diploied) 2	5.516
	CNS0095600	Silvery flower (diploied) 3	5.159
	CNS0095601	Golden flower (diploid) 1	7.426
	CNS0095602	Golden flower (diploid) 2	5.789
	CNS0095603	Golden flower (diploid) 3	5.271
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.849
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.335
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.143
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.581
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.981
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.112
	CNS0095610	Silvery flower (tetraploid) 1	6.628
	CNS0095611	Silvery flower (tetraploid) 2	4.805
	CNS0095612	Silvery flower (tetraploid) 3	4.332
	CNS0095613	Golden flower (tetraploid) 1	4.159
	CNS0095614	Golden flower (tetraploid) 2	6.305
	CNS0095615	Golden flower (tetraploid) 3	3.492
CRA001975	CRR073297	Stem 1	11.530
	CRR073298	Stem 2	9.691
	CRR073299	Stem 3	7.199
	CRR073300	Leaf 1	10.086
	CRR073301	Leaf 2	8.288
	CRR073302	Leaf 3	5.468
	CRR073303	Juvenile bud 1	5.437
	CRR073304	Juvenile bud 2	3.535
	CRR073305	Juvenile bud 3	5.888
	CRR073306	Third green 1	1.906
	CRR073307	Third green 2	1.803
	CRR073308	Third green 3	1.709
	CRR073309	Second white 1	1.302
	CRR073310	Second white 2	2.358
	CRR073311	Second white 3	1.359
	CRR073312	Silver flowering 1	1.532
	CRR073313	Silver flowering 2	2.607
	CRR073314	Silver flowering 3	2.218
	CRR073315	Gold flowering 1	2.251
	CRR073316	Gold flowering 2	4.555
	CRR073317	Gold flowering 3	1.450
	CRR073318	Tawny withering 1	3.979
	CRR073319	Tawny withering 2	7.366
	CRR073320	Tawny withering 3	3.369