Gene detail

Detail information of GWHGAAZE025054

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002272894.1	0	PREDICTED: uncharacterized protein LOC100244389 [Vitis vinifera]
trEMBL	tr\|A0A061DUF5\|A0A061DUF5_THECC	0	Mitochondrial transcription termination factor family protein, putative {ECO:0000313\|EMBL:EOX96434.1}
TAIR10	AT3G60400.1	3E-170	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	54324307	54326835	-
GWHAAZE00000007	mRNA	54324307	54326835	-
GWHAAZE00000007	exon	54324307	54325702	-
GWHAAZE00000007	exon	54326543	54326835	-
GWHAAZE00000007	CDS	54326543	54326835	-
GWHAAZE00000007	CDS	54324307	54325702	-

Transcript Sequence
>GWHTAAZE025088 ATGCAATTCCGCCAAACCACCACTGCACTTTCTCTCTACCAAACCTTTACCCGCCACCTCTCCTCTTCTTCCCCAGATCTCCCAAATCTCCGCAAAATACCCTCCAAATACAGACCCCAAGCCATCAAAGAAGCTCAAAGGGTTCTTACTGATTATTTACACGCCACTAGGACACTGCCATTTACTTTCGCGGAGCACATTAGCAAGAACTCGTTGTTCTCTCTATCAGATGTGATGGCGAAAGTCGAGTTTTCGCCTCAGACATTTTCGAAGTCGTTCCAGAAGTTCCTTAGGTATCATCCCATCAACGAATTTGAATTTCTCTACGAAAGCATTGGAATTAAACATAGTGAAGTTTATGGGTACTTGCCGGCTAATAAATTCTTTCTATCGGAGGATTCCGGGGTGTTTAATGCTGCTTGTGCACTTTCAGGTTTTGGGTTTCCTTGGAAAAAATTGGGAAAGTTGTACGAAGAAGAGATTTCAATTTTCAAGGAAGATCCATGTGAGCTAAAGAAAAAACTTAATGGGTTTAAAGAATACGGGTTTACTAGTGTGACAGTAATTGGCATTTGCTTAGCTTTCCCTTATGTGTTGCGTAGTAACTGTGATATGTCTATTGAAATTGATGCATTGTTTGATGATTTGAGAAGGGTGCTATTAGATTTTGATCTGTCAAGTTCTGTTGAGGGCAATGTGGATGGCTGGTATGAAGTTTGTAGGAAAATTCGGTTGTTTTACAACTTGGGTTGCAAGAAGGGCAAGATAGGTGAACTGATGGCCAAAAGTAAAAGCATTTTCCTTGAGCATTCGGAAGAGGCTTTGACCCGAAAGATCGAGTACTTTTGTAAATTTTCTGTTCCGAAGGAGGAGGTAGGACTTTTCATTCTTTCGAGACCAGTGATTATGAGTGTTGATGTAGATAGCGGTTTTATTTCGGTGTTGGGATTTCTTAAACATTTTGGATTGAAATCAAAGGAATTGGATTCTATTGCTCAAAAGCACCCTTATGTCTTGGGTAGAAATAGACTATCTAATTTGCCCGGTTTGATGAGATCATTGGATCTCCATGAGCGTTTCTTCAACGAGATAAAAAATGGGAATCATAAACTGTTAATTACTTATCCCATGGGCAGTCCCGATGAAGACTTGGATAATGATTTTAAAGAGAATTTGGCGAGGATTCAATCTTTAAGAACACACGTTCATGCACTAAGGAAGTTGGACTTCTTGCATGGAATTGGGTATGGAGAGAATAAATTGACTATAAAAGTCTTAACTCATGTCCATGGTAGTAGTGGCGAGTTACAAGAGCGGTTTAACTGCCTTCTTCGTAATGGAATTGAATTCTCAAAATTATGTAAAATGGTTAGCCAGTCGCCGAAGATTCTAAACCAGCAACCAGAGATTCTTGAGAAGAAAGTGAAATTCCTTTGCGAGGAAATAGGTTCCTCTTTGCAGTACCTTGACCTTTTTCCAGCCTATTTGTGTTATGACTTACACAAGAGAATTAAACCTAGGTACAGATTCCATATGTGGCTTGCAGAAAATGGTTTGTGCACAAAAGAATACTCAATAGCGAGCATGATTGCAACTAGTGAGAAAACTTTCATAGCTCGCATCTTTGTCATTCACCCAGCCGCTCCCAAGCTGTGGTTAGAATGTTTCTTATACAAAGATTTGCCTTAG

Network for GWHGAAZE025054

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.15	mTERF	239	340	1.80E-08
PF02536.15	mTERF	430	537	3.60E-16

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003690	molecular_function	double-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.690
	SRR3591706	second leaf	0.505
	SRR3591707	mature leaf	0.082
	SRR3591708	Shoot apex	0.913
	SRR3591709	Stem	0.234
	SRR3591710	White floral bud	0.647
	SRR3591711	White flower	1.159
	SRR3591712	Green floral bud	1.251
	SRR3591713	Yellow flower	0.429
SRP173429	SRR8316895	Juvenile bud stage	0.557
	SRR8316896	Juvenile bud stage	0.941
	SRR8316897	Juvenile bud stage	0.687
	SRR8316894	Third green stage	0.893
	SRR8316900	Third green stage	1.111
	SRR8316901	Third green stage	1.019
	SRR8316898	Complete white stage	0.189
	SRR8316899	Complete white stage	0.690
	SRR8316903	Complete white stage	0.271
	SRR8316902	Silver flowering stage	0.105
	SRR8316904	Silver flowering stage	0.389
	SRR8316905	Silver flowering stage	0.222
	SRR8316906	Gold flowering stage	0.366
	SRR8316907	Gold flowering stage	0.276
	SRR8316908	Gold flowering stage	0.633
SRP132670	SRR6706286	Control	0.371
	SRR6706287	Light intensity 50%	0.517
	SRR6706288	Light intensity 20%	0.621
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.684
	CNS0095593	Slightly white alabastrum(diploid) 2	0.708
	CNS0095594	Slightly white alabastrum(diploid) 3	0.394
	CNS0095595	Whole white alabastrum(diploid) 2	0.439
	CNS0095596	Whole white alabastrum(diploid) 3	0.094
	CNS0095597	Whole white alabastrum(diploid) 4	0.609
	CNS0095598	Silvery flower (diploied) 1	0.622
	CNS0095599	Silvery flower (diploied) 2	0.316
	CNS0095600	Silvery flower (diploied) 3	0.725
	CNS0095601	Golden flower (diploid) 1	0.347
	CNS0095602	Golden flower (diploid) 2	0.213
	CNS0095603	Golden flower (diploid) 3	0.826
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.354
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.882
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.165
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.779
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.361
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.262
	CNS0095610	Silvery flower (tetraploid) 1	0.542
	CNS0095611	Silvery flower (tetraploid) 2	1.036
	CNS0095612	Silvery flower (tetraploid) 3	2.061
	CNS0095613	Golden flower (tetraploid) 1	0.245
	CNS0095614	Golden flower (tetraploid) 2	0.609
	CNS0095615	Golden flower (tetraploid) 3	0.450
CRA001975	CRR073297	Stem 1	0.706
	CRR073298	Stem 2	0.476
	CRR073299	Stem 3	0.200
	CRR073300	Leaf 1	0.579
	CRR073301	Leaf 2	0.455
	CRR073302	Leaf 3	0.063
	CRR073303	Juvenile bud 1	0.133
	CRR073304	Juvenile bud 2	0.078
	CRR073305	Juvenile bud 3	0.181
	CRR073306	Third green 1	0.146
	CRR073307	Third green 2	0.106
	CRR073308	Third green 3	0.192
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.337
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.014
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.047
	CRR073316	Gold flowering 2	0.093
	CRR073317	Gold flowering 3	0.273
	CRR073318	Tawny withering 1	0.286
	CRR073319	Tawny withering 2	0.423
	CRR073320	Tawny withering 3	0.057