Gene detail

Detail information of GWHGAAZE025056

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010275392.1	1.2728E-160	PREDICTED: putative dual specificity protein phosphatase DSP8 [Nelumbo nucifera]
COG	NP_865112.1	1E-32	dual specificity phosphatase MKP-5
Swissprot	tr\|Q9ZQP1\|DSP8_ARATH	7E-131	Putative dual specificity protein phosphatase DSP8
trEMBL	tr\|A0A067H117\|A0A067H117_CITSI	3E-155	Uncharacterized protein {ECO:0000313\|EMBL:KDO85554.1}
TAIR10	AT2G35680.1	7E-97	Phosphotyrosine protein phosphatases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	54382356	54388282	+
GWHAAZE00000007	mRNA	54382356	54388282	+
GWHAAZE00000007	exon	54382356	54382504	+
GWHAAZE00000007	exon	54383113	54383380	+
GWHAAZE00000007	exon	54385005	54385127	+
GWHAAZE00000007	exon	54385461	54385554	+
GWHAAZE00000007	exon	54386818	54386900	+
GWHAAZE00000007	exon	54386992	54387081	+
GWHAAZE00000007	exon	54387895	54388282	+
GWHAAZE00000007	five_prime_UTR	54382356	54382504	+
GWHAAZE00000007	five_prime_UTR	54383113	54383170	+
GWHAAZE00000007	CDS	54383171	54383380	+
GWHAAZE00000007	CDS	54385005	54385127	+
GWHAAZE00000007	CDS	54385461	54385554	+
GWHAAZE00000007	CDS	54386818	54386900	+
GWHAAZE00000007	CDS	54386992	54387081	+
GWHAAZE00000007	CDS	54387895	54388278	+
GWHAAZE00000007	three_prime_UTR	54388279	54388282	+

Transcript Sequence
>GWHTAAZE025090 TCCTTCATCCAGATATGATCAGTACTACTGCCAGCATTTTCCCATTGAGTGTCTTTTTGTGTGTCTATGGTGTTCCGATTCGGTGTAGAAATCACAGTATTTGTTGTTTGAGTTGAATCTTCGATCTTCTTCTAATTTTATATGCATAGGTCAAATTAAGGAGTTTTGTTGAAGGTTAGAGTTATTTGGTGAAATCTTATTGGAGAAATGTATATTGAGGAACTGAAAGAGGGGGAATTAGAGAGCGGAGAGGAGCAGTTGTCCAGTGAACTTTCTAATGGTTCTGTTACTGTTTCGGATGCGAAGCGAGTTTTGGTTGGAGCAGGGGCTCGTGCTCTTTTTTACCCCACGCTGCTGTATAATGTTGTAAGGAACAAGATTCAATCTGATTTCCGTTGGTGGGATAGGGTTGATGAGTTTATATTGTTGGGCGCTGTGCCGTTTCCTGCTGATGTTCCATGCTTGAAGGAACTTGGTGTTTGTGGAGTTGTTACCCTAAATGAACCTTATGAGACATTGGTCCCGACATCATTATACCATGCTCATAACATTGATCATCTGGTGATTCCAACAAGAGATTATCTTTTTGCTCCATCATATGGTGATATTTGCCAAGCCGTAGAGTTTATCAATGAGAATGCATTGTGCGGTAAAACGACATACGTCCATTGTAAGGCTGGTCGGGGGCGCAGCACTACCATTGTTCTATGTTACCTGGTGGAGCACAAGCAGATGATGCCTGATGCTGCCTTGGATTACGTGAGGTCCATCAGGCCTAGGGTACGATTGGCCGCTGCCCAGTGGCAGGCCGTTCAAGAATACTACTTTCACAGAGTGAAGAAAATCGAAAGCACCGTCCACACTTATGCTTCACTACAGAATACCCTAACTTTCCAAACAAAACCTGTCGCTGAAGCATTTGATGACGGGTCCGTTGTGTTGGTAACAGAATCGGACCTCGAAGGGTACAATGAGAACGGTAACTACTCTGGTGGAGTAGGTAACGAAATGCTCGAAGAGCTGAGTGTGGCCTATAGGGTTCAGTTTGCTAGCCAGGCGGCCATAGCGAGGCTCTCCTGTCTGTGGCTCCGTTGCCACATAGGCACAAAAATGTCCGCAAAGAAACCCGAAAGCTCTGTTGGTAGTAGTGATCAAATGGGAGGTATTAGCGTTGACATTCGGGTTTATTGAAATC

Network for GWHGAAZE025056

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0276

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00782.21	DSPc	104	206	1.30E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016311	biological_process	dephosphorylation
GO:0006470	biological_process	protein dephosphorylation
GO:0016791	molecular_function	phosphatase activity
GO:0008138	molecular_function	protein tyrosine/serine/threonine phosphatase activity
GO:0004725	molecular_function	protein tyrosine phosphatase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	45.491
	SRR3591706	second leaf	31.039
	SRR3591707	mature leaf	38.124
	SRR3591708	Shoot apex	33.615
	SRR3591709	Stem	75.846
	SRR3591710	White floral bud	35.808
	SRR3591711	White flower	39.178
	SRR3591712	Green floral bud	35.837
	SRR3591713	Yellow flower	42.974
SRP173429	SRR8316895	Juvenile bud stage	27.809
	SRR8316896	Juvenile bud stage	37.493
	SRR8316897	Juvenile bud stage	15.680
	SRR8316894	Third green stage	12.052
	SRR8316900	Third green stage	37.913
	SRR8316901	Third green stage	32.577
	SRR8316898	Complete white stage	11.770
	SRR8316899	Complete white stage	45.729
	SRR8316903	Complete white stage	18.026
	SRR8316902	Silver flowering stage	9.805
	SRR8316904	Silver flowering stage	12.636
	SRR8316905	Silver flowering stage	7.190
	SRR8316906	Gold flowering stage	20.845
	SRR8316907	Gold flowering stage	23.514
	SRR8316908	Gold flowering stage	21.726
SRP132670	SRR6706286	Control	28.067
	SRR6706287	Light intensity 50%	28.219
	SRR6706288	Light intensity 20%	29.417
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	23.990
	CNS0095593	Slightly white alabastrum(diploid) 2	17.939
	CNS0095594	Slightly white alabastrum(diploid) 3	22.377
	CNS0095595	Whole white alabastrum(diploid) 2	20.387
	CNS0095596	Whole white alabastrum(diploid) 3	20.348
	CNS0095597	Whole white alabastrum(diploid) 4	21.709
	CNS0095598	Silvery flower (diploied) 1	17.621
	CNS0095599	Silvery flower (diploied) 2	19.089
	CNS0095600	Silvery flower (diploied) 3	24.496
	CNS0095601	Golden flower (diploid) 1	22.017
	CNS0095602	Golden flower (diploid) 2	24.538
	CNS0095603	Golden flower (diploid) 3	22.604
	CNS0095604	Slightly white alabastrum(tetraploid) 1	27.578
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.859
	CNS0095606	Slightly white alabastrum(tetraploid) 3	37.192
	CNS0095607	Whole white alabastrum(tetraploid) 1	23.671
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.310
	CNS0095609	Whole white alabastrum(tetraploid) 3	46.861
	CNS0095610	Silvery flower (tetraploid) 1	23.608
	CNS0095611	Silvery flower (tetraploid) 2	26.665
	CNS0095612	Silvery flower (tetraploid) 3	20.391
	CNS0095613	Golden flower (tetraploid) 1	16.697
	CNS0095614	Golden flower (tetraploid) 2	26.221
	CNS0095615	Golden flower (tetraploid) 3	20.413
CRA001975	CRR073297	Stem 1	34.662
	CRR073298	Stem 2	28.544
	CRR073299	Stem 3	32.072
	CRR073300	Leaf 1	26.657
	CRR073301	Leaf 2	26.008
	CRR073302	Leaf 3	24.198
	CRR073303	Juvenile bud 1	19.654
	CRR073304	Juvenile bud 2	19.346
	CRR073305	Juvenile bud 3	21.780
	CRR073306	Third green 1	6.412
	CRR073307	Third green 2	7.759
	CRR073308	Third green 3	6.499
	CRR073309	Second white 1	8.086
	CRR073310	Second white 2	7.126
	CRR073311	Second white 3	7.364
	CRR073312	Silver flowering 1	5.481
	CRR073313	Silver flowering 2	3.751
	CRR073314	Silver flowering 3	4.925
	CRR073315	Gold flowering 1	7.096
	CRR073316	Gold flowering 2	11.184
	CRR073317	Gold flowering 3	7.911
	CRR073318	Tawny withering 1	21.252
	CRR073319	Tawny withering 2	16.196
	CRR073320	Tawny withering 3	20.299