Gene detail

Detail information of GWHGAAZE025061

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP09446.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|O22161\|ADLO1_ARATH	Protein ARABIDILLO 1
trEMBL	tr\|A0A068ULU9\|A0A068ULU9_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_38 {ECO:0000313\|EMBL:CDP09446.1}
TAIR10	AT2G44900.1	ARABIDILLO-1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	54458443	54463806	-
GWHAAZE00000007	mRNA	54458443	54463806	-
GWHAAZE00000007	exon	54458443	54458443	-
GWHAAZE00000007	exon	54460291	54460421	-
GWHAAZE00000007	exon	54460809	54460940	-
GWHAAZE00000007	exon	54461540	54461620	-
GWHAAZE00000007	exon	54461705	54461863	-
GWHAAZE00000007	exon	54462457	54463806	-
GWHAAZE00000007	CDS	54462457	54463806	-
GWHAAZE00000007	CDS	54461705	54461863	-
GWHAAZE00000007	CDS	54461540	54461620	-
GWHAAZE00000007	CDS	54460809	54460940	-
GWHAAZE00000007	CDS	54460291	54460421	-
GWHAAZE00000007	CDS	54458443	54458443	-

Transcript Sequence
>GWHTAAZE025095 ATGAGTCGAAGGGTCCGTAGGAAGGTGGCGAGAAGGGGAAAAGATAAGGTGGATTTGCCAAGTTACCCGGAAACTGAGGATGAACACTTGAGTTTAGATGAAAAGGGGGTAGTTGATTGGACTAGATTACCAGATGATACCGTAATTCAGCTATTTTCATGTTTGAATTATCGAGATCGAGCAAGTTTATCGTCGACTTGTCAAACATGGAGGATTCTTGGCATTTCGCCTTGTTTGTGGCAATCGTTGGATCTTCGAGCTCACAAATGTGATGCCACCGCAGCATCTTCTCTTGTTTCTCGATGTACAAATCTTCAGAAGCTAAGATTTCGAGGGGCAGAATCGGCTGATGCAATAATAAATCTTCAAGCCAGGGGTTTGAGGGAAATTAGTGGAGACTACTGCAGGAAAATAACTGATGCTACACTCTCTGTGATTGCGGCTCGGCACGAGGCACTTGAAAGCCTCCAACTCGGGCCTGATTTTTGCGAACGAATCAGTAGTGATGCGATAAAAGCTATTGCTTTTTGCTGTCCTAAGCTTCGTAAGCTTCGGCTTTCGGGTATTCGTGAAGTTGACGGTGATGCCATCAATGCTTTGGCTAAGCATTGTCTCAACTTGACTGACATTGGTTTCATCGACTGTCTTAATGTTGATGAGGTGGCATTGGGAAACGTGTCATCGGTTCGCTTCCTCTCAGTTGCGGGGACAACAAATATGAAGTGGGTTTTGGTTTCGGAGCATTGGTGTAAGTTGCCCAACTTGAAAGGTTTAGATGTTTCGAGAACCGATATTATTCCTACTGCTGTTTTAAGATTGTTTTCATCCTCTCAAAGCTTGAAGGTCTTGTGCGCATTGAACTGCCTAGCCCTCGAAGAAGATAGCAGCTTTGCTTCAAATAACAATAACAAGGGCAAATTGCTATTTGCCCTTTTCACCGACATTTTTAAAGGAGTATCTTGTCTATTTGATACTAGAGAGAAAGAGAGGAATGTTTTCTCGGATTGGAGAAATTCAAAGAACAAAGATAAAAACTTGGATGAGATTATGAGCTGGCTTGAATGGATACTTTCCCATTCACTGTTACGTATTGCTGAGAGCAATCCACAGGGTTTAGATAATTTTTGGCTTAGCCAAGGTGCAGCATTGTTGCTTAGTTTAATGCAGAGCTCACAAGAGGATGTTCAAGAACGTGCAGCCACTGGCATTGCCACTTTTGTTGTCATTGATGATGAAAATGCTAGTATTCATCGTGGACGAGCGGAAGCGGTTATGCGGGATGGTGGCATAAGACTCCTTTTGAATCTTGCAAGATCTTGGAGGGAGGGGCTTCAGTCAGAGGCGGCAAAGGCTATAGCAAACCTTTCAGTGAATGAGAATGTTGCAAAAGCTGTTGCAGAAGATGGAGGAATCAATATTCTTGCAAGTTTAGCAAGGTCTATGAACAGGTTGGTTGCTGAAGAGGCTGCTGGAGGTCTGTGGAATCTCTCTGTTGGGGAAGAGCACAAGAGTGCTATTGCGGAAGCTGGTGGTGTAAAAGCATTGGTTGATCTAATCTTCAAATGGTCCACCGGTGGTGATGGAGTTCTGGAGCGTGCGGCTGGTGCTTTGGCAAATTTGGCAGCTGATGATAAGTGTAGCATGGAGGTTGCACTGGTAGGGGGTGTTCATGCTTTGGTCATGCTTGCGCGGAACTGCAAGTATGAGGGGGTACAAGAGCAGGCTGCTCGGGCGTTGGCTAATTTGGCTGCCCATGGAGATAGCAACAGTAACAATGCTGCTGTTGGTCAAGAGGCAGGAGCTCTTGAAGCGCTTGTGCAGCTGACTCGTTCTCCTCATGATGGTGTCAGGTGA

Network for GWHGAAZE025061

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12937.8	F-box-like	40	86	5.40E-06
PF00514.24	Arm	422	456	4.50E-05
PF00514.24	Arm	462	497	0.00014
PF00514.24	Arm	500	542	1.10E-07
PF00514.24	Arm	553	584	2.80E-05

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.594
	SRR3591706	second leaf	10.704
	SRR3591707	mature leaf	10.248
	SRR3591708	Shoot apex	11.753
	SRR3591709	Stem	12.336
	SRR3591710	White floral bud	21.144
	SRR3591711	White flower	22.328
	SRR3591712	Green floral bud	17.157
	SRR3591713	Yellow flower	14.424
SRP173429	SRR8316895	Juvenile bud stage	9.974
	SRR8316896	Juvenile bud stage	14.809
	SRR8316897	Juvenile bud stage	5.248
	SRR8316894	Third green stage	6.691
	SRR8316900	Third green stage	16.860
	SRR8316901	Third green stage	15.372
	SRR8316898	Complete white stage	5.880
	SRR8316899	Complete white stage	18.279
	SRR8316903	Complete white stage	13.855
	SRR8316902	Silver flowering stage	6.305
	SRR8316904	Silver flowering stage	10.774
	SRR8316905	Silver flowering stage	4.298
	SRR8316906	Gold flowering stage	11.501
	SRR8316907	Gold flowering stage	11.417
	SRR8316908	Gold flowering stage	12.724
SRP132670	SRR6706286	Control	22.665
	SRR6706287	Light intensity 50%	21.542
	SRR6706288	Light intensity 20%	21.378
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.915
	CNS0095593	Slightly white alabastrum(diploid) 2	6.622
	CNS0095594	Slightly white alabastrum(diploid) 3	7.184
	CNS0095595	Whole white alabastrum(diploid) 2	8.360
	CNS0095596	Whole white alabastrum(diploid) 3	8.203
	CNS0095597	Whole white alabastrum(diploid) 4	8.650
	CNS0095598	Silvery flower (diploied) 1	8.645
	CNS0095599	Silvery flower (diploied) 2	8.498
	CNS0095600	Silvery flower (diploied) 3	22.723
	CNS0095601	Golden flower (diploid) 1	7.085
	CNS0095602	Golden flower (diploid) 2	18.219
	CNS0095603	Golden flower (diploid) 3	16.964
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.343
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.564
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.696
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.230
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.086
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.901
	CNS0095610	Silvery flower (tetraploid) 1	21.930
	CNS0095611	Silvery flower (tetraploid) 2	22.591
	CNS0095612	Silvery flower (tetraploid) 3	26.277
	CNS0095613	Golden flower (tetraploid) 1	7.056
	CNS0095614	Golden flower (tetraploid) 2	16.681
	CNS0095615	Golden flower (tetraploid) 3	17.137
CRA001975	CRR073297	Stem 1	15.725
	CRR073298	Stem 2	14.796
	CRR073299	Stem 3	14.152
	CRR073300	Leaf 1	20.364
	CRR073301	Leaf 2	14.985
	CRR073302	Leaf 3	12.653
	CRR073303	Juvenile bud 1	12.264
	CRR073304	Juvenile bud 2	8.890
	CRR073305	Juvenile bud 3	15.414
	CRR073306	Third green 1	8.034
	CRR073307	Third green 2	5.785
	CRR073308	Third green 3	8.579
	CRR073309	Second white 1	7.608
	CRR073310	Second white 2	11.062
	CRR073311	Second white 3	11.272
	CRR073312	Silver flowering 1	10.011
	CRR073313	Silver flowering 2	7.620
	CRR073314	Silver flowering 3	6.469
	CRR073315	Gold flowering 1	4.500
	CRR073316	Gold flowering 2	9.484
	CRR073317	Gold flowering 3	7.003
	CRR073318	Tawny withering 1	8.347
	CRR073319	Tawny withering 2	5.586
	CRR073320	Tawny withering 3	8.071