Detail information of GWHGAAZE025064


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006375124.10H+-ATPase family protein [Populus trichocarpa]
COGYP_006722443.10cation-translocating P-type ATPase
Swissprottr|P22180|PMA1_SOLLC0Plasma membrane ATPase 1
trEMBLtr|U5FSH1|U5FSH1_POPTR0H+-ATPase family protein {ECO:0000313|EMBL:ERP52921.1}
TAIR10AT5G62670.10H(+)-ATPase 11

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene5451555454526566-
GWHAAZE00000007mRNA5451555454526566-
GWHAAZE00000007exon5451555454515650-
GWHAAZE00000007exon5451631054516488-
GWHAAZE00000007exon5451744954517631-
GWHAAZE00000007exon5451833054518542-
GWHAAZE00000007exon5451906354519223-
GWHAAZE00000007exon5451934054519421-
GWHAAZE00000007exon5451954054519572-
GWHAAZE00000007exon5451974054519918-
GWHAAZE00000007exon5452045354520617-
GWHAAZE00000007exon5452119754521341-
GWHAAZE00000007exon5452208554522189-
GWHAAZE00000007exon5452228054522402-
GWHAAZE00000007exon5452273454522853-
GWHAAZE00000007exon5452327254523391-
GWHAAZE00000007exon5452352254523728-
GWHAAZE00000007exon5452407954524258-
GWHAAZE00000007exon5452489654525168-
GWHAAZE00000007exon5452558154525700-
GWHAAZE00000007exon5452651354526566-
GWHAAZE00000007CDS5452651354526566-
GWHAAZE00000007CDS5452558154525700-
GWHAAZE00000007CDS5452489654525168-
GWHAAZE00000007CDS5452407954524258-
GWHAAZE00000007CDS5452352254523728-
GWHAAZE00000007CDS5452327254523391-
GWHAAZE00000007CDS5452273454522853-
GWHAAZE00000007CDS5452228054522402-
GWHAAZE00000007CDS5452208554522189-
GWHAAZE00000007CDS5452119754521341-
GWHAAZE00000007CDS5452045354520617-
GWHAAZE00000007CDS5451974054519918-
GWHAAZE00000007CDS5451954054519572-
GWHAAZE00000007CDS5451934054519421-
GWHAAZE00000007CDS5451906354519223-
GWHAAZE00000007CDS5451833054518542-
GWHAAZE00000007CDS5451744954517631-
GWHAAZE00000007CDS5451631054516488-
GWHAAZE00000007CDS5451555454515650-
Transcript Sequence

Network for GWHGAAZE025064

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00690.27Cation_ATPase_N23617.40E-07
PF00122.21E1-E2_ATPase992773.20E-48
PF00702.27Hydrolase2945711.40E-17
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01535PMA1, PMA2 Metabolic pathways map01100
Oxidative phosphorylationmap00190

Gene Ontology

GO term OntologyName
GO:0120029biological_processproton export across plasma membrane
GO:0016021cellular_componentintegral component of membrane
GO:0008553molecular_functionproton-exporting ATPase activity, phosphorylative mechanism
GO:0000166molecular_functionnucleotide binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.259
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.184
SRR3591709Stem0.140
SRR3591710White floral bud0.106
SRR3591711White flower0.000
SRR3591712Green floral bud0.150
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.518
SRR8316896Juvenile bud stage 0.540
SRR8316897Juvenile bud stage 1.351
SRR8316894Third green stage 0.449
SRR8316900Third green stage 1.127
SRR8316901Third green stage 0.897
SRR8316898Complete white stage 0.163
SRR8316899Complete white stage 0.884
SRR8316903Complete white stage 0.116
SRR8316902Silver flowering stage0.068
SRR8316904Silver flowering stage0.001
SRR8316905Silver flowering stage0.031
SRR8316906Gold flowering stage 0.088
SRR8316907Gold flowering stage 0.047
SRR8316908Gold flowering stage 0.085
SRP132670SRR6706286Control0.965
SRR6706287Light intensity 50%0.968
SRR6706288Light intensity 20%1.264
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.799
CNS0095593Slightly white alabastrum(diploid) 20.565
CNS0095594Slightly white alabastrum(diploid) 31.132
CNS0095595Whole white alabastrum(diploid) 20.793
CNS0095596Whole white alabastrum(diploid) 31.217
CNS0095597Whole white alabastrum(diploid) 40.963
CNS0095598Silvery flower (diploied) 10.672
CNS0095599Silvery flower (diploied) 20.524
CNS0095600Silvery flower (diploied) 30.234
CNS0095601Golden flower (diploid) 10.406
CNS0095602Golden flower (diploid) 20.155
CNS0095603Golden flower (diploid) 30.295
CNS0095604Slightly white alabastrum(tetraploid) 10.854
CNS0095605Slightly white alabastrum(tetraploid) 20.738
CNS0095606Slightly white alabastrum(tetraploid) 31.755
CNS0095607Whole white alabastrum(tetraploid) 11.127
CNS0095608Whole white alabastrum(tetraploid) 20.492
CNS0095609Whole white alabastrum(tetraploid) 31.335
CNS0095610Silvery flower (tetraploid) 10.147
CNS0095611Silvery flower (tetraploid) 20.150
CNS0095612Silvery flower (tetraploid) 30.256
CNS0095613Golden flower (tetraploid) 10.009
CNS0095614Golden flower (tetraploid) 20.182
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 11.169
CRR073298Stem 21.700
CRR073299Stem 31.100
CRR073300Leaf 11.971
CRR073301Leaf 21.820
CRR073302Leaf 31.922
CRR073303Juvenile bud 12.464
CRR073304Juvenile bud 21.373
CRR073305Juvenile bud 32.595
CRR073306Third green 10.166
CRR073307Third green 20.194
CRR073308Third green 30.154
CRR073309Second white 10.107
CRR073310Second white 20.003
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.020
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.057
CRR073317Gold flowering 30.069
CRR073318Tawny withering 10.280
CRR073319Tawny withering 20.248
CRR073320Tawny withering 30.021