Gene detail

Detail information of GWHGAAZE025074

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007052326.1	Glycine-tRNA ligases [Theobroma cacao]
COG	YP_004173507.1	glycyl-tRNA synthetase
Swissprot	tr\|Q8L785\|SYGM2_ARATH	Glycine--tRNA ligase 2, chloroplastic/mitochondrial (Precursor)
trEMBL	tr\|A0A061E2H3\|A0A061E2H3_THECC	Glycine-tRNA ligases {ECO:0000313\|EMBL:EOX96483.1}
TAIR10	AT3G48110.1	glycine-tRNA ligases

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	54757296	54784846	+
GWHAAZE00000007	mRNA	54757296	54784846	+
GWHAAZE00000007	exon	54757296	54757549	+
GWHAAZE00000007	exon	54762433	54762483	+
GWHAAZE00000007	exon	54763007	54763074	+
GWHAAZE00000007	exon	54765227	54765308	+
GWHAAZE00000007	exon	54765443	54765506	+
GWHAAZE00000007	exon	54765931	54765986	+
GWHAAZE00000007	exon	54766175	54766252	+
GWHAAZE00000007	exon	54766399	54766473	+
GWHAAZE00000007	exon	54766559	54766629	+
GWHAAZE00000007	exon	54767114	54767230	+
GWHAAZE00000007	exon	54767347	54767448	+
GWHAAZE00000007	exon	54767592	54767718	+
GWHAAZE00000007	exon	54770135	54770218	+
GWHAAZE00000007	exon	54770659	54770745	+
GWHAAZE00000007	exon	54770980	54771081	+
GWHAAZE00000007	exon	54771510	54771573	+
GWHAAZE00000007	exon	54771770	54771949	+
GWHAAZE00000007	exon	54772557	54772612	+
GWHAAZE00000007	exon	54774111	54774182	+
GWHAAZE00000007	exon	54774534	54774620	+
GWHAAZE00000007	exon	54775466	54775528	+
GWHAAZE00000007	exon	54775631	54775720	+
GWHAAZE00000007	exon	54775811	54775897	+
GWHAAZE00000007	exon	54777988	54778059	+
GWHAAZE00000007	exon	54778172	54778230	+
GWHAAZE00000007	exon	54778376	54778469	+
GWHAAZE00000007	exon	54778674	54778892	+
GWHAAZE00000007	exon	54779527	54779621	+
GWHAAZE00000007	exon	54779843	54779933	+
GWHAAZE00000007	exon	54780025	54780129	+
GWHAAZE00000007	exon	54781343	54781432	+
GWHAAZE00000007	exon	54781713	54781814	+
GWHAAZE00000007	exon	54782550	54782673	+
GWHAAZE00000007	exon	54783038	54783123	+
GWHAAZE00000007	exon	54784748	54784846	+
GWHAAZE00000007	five_prime_UTR	54757296	54757315	+
GWHAAZE00000007	CDS	54757316	54757549	+
GWHAAZE00000007	CDS	54762433	54762483	+
GWHAAZE00000007	CDS	54763007	54763074	+
GWHAAZE00000007	CDS	54765227	54765308	+
GWHAAZE00000007	CDS	54765443	54765506	+
GWHAAZE00000007	CDS	54765931	54765986	+
GWHAAZE00000007	CDS	54766175	54766252	+
GWHAAZE00000007	CDS	54766399	54766473	+
GWHAAZE00000007	CDS	54766559	54766629	+
GWHAAZE00000007	CDS	54767114	54767230	+
GWHAAZE00000007	CDS	54767347	54767448	+
GWHAAZE00000007	CDS	54767592	54767718	+
GWHAAZE00000007	CDS	54770135	54770218	+
GWHAAZE00000007	CDS	54770659	54770745	+
GWHAAZE00000007	CDS	54770980	54771081	+
GWHAAZE00000007	CDS	54771510	54771573	+
GWHAAZE00000007	CDS	54771770	54771949	+
GWHAAZE00000007	CDS	54772557	54772612	+
GWHAAZE00000007	CDS	54774111	54774182	+
GWHAAZE00000007	CDS	54774534	54774620	+
GWHAAZE00000007	CDS	54775466	54775528	+
GWHAAZE00000007	CDS	54775631	54775720	+
GWHAAZE00000007	CDS	54775811	54775897	+
GWHAAZE00000007	CDS	54777988	54778059	+
GWHAAZE00000007	CDS	54778172	54778230	+
GWHAAZE00000007	CDS	54778376	54778469	+
GWHAAZE00000007	CDS	54778674	54778892	+
GWHAAZE00000007	CDS	54779527	54779621	+
GWHAAZE00000007	CDS	54779843	54779933	+
GWHAAZE00000007	CDS	54780025	54780129	+
GWHAAZE00000007	CDS	54781343	54781432	+
GWHAAZE00000007	CDS	54781713	54781814	+
GWHAAZE00000007	CDS	54782550	54782673	+
GWHAAZE00000007	CDS	54783038	54783123	+
GWHAAZE00000007	CDS	54784748	54784846	+

Transcript Sequence
>GWHTAAZE025108 ACACTCACTCTTACACATCAATGGCGATTCTTAGTTTCTCTTTAGTCACGTCAATTCTAAGACCCCACAAACCCCACCTCTCCTTCCTCTTCACTACCAAACCTAGCCCTATTCTTCTCCAACGCCGCCGTTTCACCAAAACTATTGCTGTCTCCACCTCTTCAACTGCCCATCAATCCTCCTTAAACCCTAATTCCGATCCCATTAAGAAAGCTTCTGTACCGACTTTTCAACAGGCTATTCAGCGACTTCAGGAGTATTGGGCATCTGTTGGATGTGCTATAATGCAGTGCAGCAACACTGAGGTTGGAGCTGGGACTATGAATCCTTTGACATTCTTAAGGGTTCTTGGTCCAGAACCATGGAATGTTGCGTATGTGGAACCCAGTATCCGGCCAGATGATAGTCGTTATGGTGAAAACCCGAATAGGCTTCAACGCCACACTCAGTTCCAGGTTATATTGAAGCCTGATCCTGGAAATTCACAAGACCTGTTTATCCGGAGCCTAGCAGCCCTAGGTATAGATGTTAATGAACATGACATACGTTTTGTGGAGGACAACTGGGAAAGCCCGGTGCTTGGTGCCTGGGGATTGGGCTGGGAAATCTGGATGGATGGAATGGAGATCACACAATTCACCTACTTTCAGCAGTCTGGAAGCCTTCAACTGATGCCGGTATCTATTGAGATCACTTATGGTCTTGAACGTATTCTGATGTTACTTCAGGGAGTTGATCATTTCAAGAAAATCCAGTATGCTGATGGAATTACATATGGAGAGCTATTTTCTGAGAATGAGAAAGAAATGAGTGCATATAATCTTGAGCATGCCAGTGTCAATCATATCCAAAAACACTTTGATCTTTTTGAGGCAGAAGCACGCTCTTTGCTTGATTTAGGCCTTGCAATACCTGCGTATGACCAGCTTTTAAAGACCTCTCATGCTTTTAATATCTTAGATGCTAGAGGCTTTGTGGGGGTAACAGAAAGGGCTCGTTATTTTGGACGAATGCGTAGTGTAGCTCGTCAATGTGCACTACTTTGGGTGAAGACAAGGGAGTCTCTTGGGCATCCACTTGGAGTTATTTCTCAAACTGGTCGTCTTCTTGTTCCTAAGGAGGTTATGGAGGCTGCGGTGAAAAAGGTGCCTACAAAACCGAGGTTGTTTGTTCTTGAAATCGGAACAGAAGAGTTGCCACCAAATGATGTAGCTAATGCAAGACAAGAACTTAAGGATCTAATTGTGCAGCTACTGGAGAAACAAAGGTTGAGCCATGGTGAAGTGCTAGCATTTGGCACACCACGCCGGCTGGTGGTTCATGTTGAGAGCCTATGCTCGAAGCAAAAGGAGAATGAGGTTGAGGTTCGAGGACCTCCAGTTTTAAAGGCATTTGACAACCAAGGAAATCCTACAAAGGCTGCTGAAGGTTTCTGCGGTAGATATTCTGTACCATTGGACTCCTTGTATAGAAGGGTTGAAGGACTGACCCCATTAAGTGATGGCCTGTGCCCCATGTTGTCTCAAGGGCCGAGCTGGTGGGCCCTTGACTGGTCAAAGGGTCAGGGTTGCATACTTCAGGGGCACAAAGTCCCATTCTATGAGCCAACTGCGGTCTACAGTGGGCCGGCCTTGATGCGTAATAAATTGGCTATAAAGGGCTGGAAAACAGAGTATATCTATGCCCGTGTTGTGGAGTCTGCAAAACTTGCTTTGGAGGTTTTATCTGAAGAGTTGCCTGGTACTATCGCAAAAGTGTCATTCCCGAAGTCAATGCGCTGGAACTCTGAGGTCATGTTCAGCAGACCTGTTCGTTGGATTTTGGCCCTCCATGGAGATGTAGTCGTTCCATTCATGTTTGCTGGTGTTCTAAGGCAAGTAGAGAATGCTGAATCTTATGCTGATAAGATGCAGAGTGCTGGAATTTCTGTTGATATTGAGAAACGCAAGAAAATGATTTTAGAACGCTCCAATGCTTTAGCAAAAAGGGTCGATGCATGTATCGTAATGCAGAGTGGGTTGCTTGATGAGGTTATAAATCTTGTTGAGGCACCCGTTCCAGTACTTGGGAAGTTCGAAGAGTCATTCTTGGTGCTTCCAAAAGATCTACTAGTAATGGTTATGCAGAAGCACCAGAAGTATTTTGCACTAACCGATCAGAATGGAAAACTGTTACCATACTTCATCTCTGTTGCAAATGGAATGATAAACGAGAAGGTAGTTCAGAAAGGAAATGAAGCTGTTCTTAGAGCTCGATATGAAGATGCAAAGTTTTTCTATGAGATGGACACTAGTAAAAAGTTTTCGCAATTCCGAAATCAACTCAAAGGGATTCTTTTCCATGAGAAACTTGGGACAATGTTGGACAAGATGGTGCGGGTCCAAAGCACTGTTTCTGAGCTAGGGTTGGTTCTCGGAATTAGTGAAGATATGGTCAAGATCGTTGAGGAGGCTGCATCATTGGCTATGTCAGATCTTGCTACAGCTGTTGTTACAGAATTTACTTCCCTCTCGGGAATAATGGCATCGCACTATGCTCTTAGGGATGGCTATTCAGAGCAGATTGCAGAGGCATTGTTTGAGATCACACTTCCACGATTTTCTGGAGATATCACCCCAAAAACTGATGCAGGGACTGTATTGGCAATTGCTGACAGGTTAGACAGCCTTGTTGGCTTGTTTGGAGCTGGTTGTCAGCCAAGCTCCAGTAGTGATCCATTTGGCCTGCGAAGAATTTCCTATGGTCTTGTCCAACTGTTGGTGGAAAACAACAGAAACTTGGATTTAAGACATGCTTTGGGGCTTGCTGCTGCTGTCCAACCCATAGAAGTAGATGTCAAAATAATAGATGATGTCGATAAAGGAATAAATCCAGAAGTGGTTCGTTCGATTCTTTTAGAACGTGGAAACTGGCCTTGTCTGGCTGCTAAGTCAGTGTACAAGTTGGATGCCTTGTCGAGAGGCGAGCTTCTACCAAAGGTTGTTGAAGCATATTCTCGTCCAACAAGAATTGTCCGCGGAAAGGATATAAATACTGATTTGGAGGTGGATGAAGCAGTCTTTGAGATGAACGAAGAGAGAACTTTATGGAGCACTTTCTTGTCATTAAGAAGCAAACTTCACCCTGGTACCATTTCTTTCTCAAGTTACGACTTTGTTGTCTTATCGAGTATTGATGTGGATGAGTTTGTTGAAGCATCCTCGCAACTAGTACAGCCGCTTGAAGATTTTTTCAATGAAGTCTTTGTTATGGTGGAAGAGGAAAAAATAAGAAACAACAGGCTTGCCCTACTAAAGAAAATAGCTGACCTTCCAAGAGGAATAGTGGACTTCTCAGTTTTGCCTGGATTTTGA

Network for GWHGAAZE025074

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02091.16	tRNA-synt_2e	70	347	2.30E-131
PF02092.18	tRNA_synt_2f	383	485	5.00E-26
PF02092.18	tRNA_synt_2f	542	933	7.90E-126

Protein Sequence

>GWHPAAZE025092
MAILSFSLVTSILRPHKPHLSFLFTTKPSPILLQRRRFTKTIAVSTSSTAHQSSLNPNSDPIKKASVPTFQQAIQRLQEYWASVGCAIMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLAALGIDVNEHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQSGSLQLMPVSIEITYGLERILMLLQGVDHFKKIQYADGITYGELFSENEKEMSAYNLEHASVNHIQKHFDLFEAEARSLLDLGLAIPAYDQLLKTSHAFNILDARGFVGVTERARYFGRMRSVARQCALLWVKTRESLGHPLGVISQTGRLLVPKEVMEAAVKKVPTKPRLFVLEIGTEELPPNDVANARQELKDLIVQLLEKQRLSHGEVLAFGTPRRLVVHVESLCSKQKENEVEVRGPPVLKAFDNQGNPTKAAEGFCGRYSVPLDSLYRRVEGLTPLSDGLCPMLSQGPSWWALDWSKGQGCILQGHKVPFYEPTAVYSGPALMRNKLAIKGWKTEYIYARVVESAKLALEVLSEELPGTIAKVSFPKSMRWNSEVMFSRPVRWILALHGDVVVPFMFAGVLRQVENAESYADKMQSAGISVDIEKRKKMILERSNALAKRVDACIVMQSGLLDEVINLVEAPVPVLGKFEESFLVLPKDLLVMVMQKHQKYFALTDQNGKLLPYFISVANGMINEKVVQKGNEAVLRARYEDAKFFYEMDTSKKFSQFRNQLKGILFHEKLGTMLDKMVRVQSTVSELGLVLGISEDMVKIVEEAASLAMSDLATAVVTEFTSLSGIMASHYALRDGYSEQIAEALFEITLPRFSGDITPKTDAGTVLAIADRLDSLVGLFGAGCQPSSSSDPFGLRRISYGLVQLLVENNRNLDLRHALGLAAAVQPIEVDVKIIDDVDKGINPEVVRSILLERGNWPCLAAKSVYKLDALSRGELLPKVVEAYSRPTRIVRGKDINTDLEVDEAVFEMNEERTLWSTFLSLRSKLHPGTISFSSYDFVVLSSIDVDEFVEASSQLVQPLEDFFNEVFVMVEEEKIRNNRLALLKKIADLPRGIVDFSVLPGF

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14164	glyQS	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0006426	biological_process	glycyl-tRNA aminoacylation
GO:0005737	cellular_component	cytoplasm
GO:0000166	molecular_function	nucleotide binding
GO:0004820	molecular_function	glycine-tRNA ligase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.922
	SRR3591706	second leaf	4.762
	SRR3591707	mature leaf	4.601
	SRR3591708	Shoot apex	10.343
	SRR3591709	Stem	4.936
	SRR3591710	White floral bud	9.945
	SRR3591711	White flower	28.239
	SRR3591712	Green floral bud	7.813
	SRR3591713	Yellow flower	22.907
SRP173429	SRR8316895	Juvenile bud stage	6.456
	SRR8316896	Juvenile bud stage	8.758
	SRR8316897	Juvenile bud stage	4.565
	SRR8316894	Third green stage	3.634
	SRR8316900	Third green stage	9.258
	SRR8316901	Third green stage	7.409
	SRR8316898	Complete white stage	1.660
	SRR8316899	Complete white stage	4.190
	SRR8316903	Complete white stage	2.898
	SRR8316902	Silver flowering stage	1.865
	SRR8316904	Silver flowering stage	2.049
	SRR8316905	Silver flowering stage	0.699
	SRR8316906	Gold flowering stage	3.359
	SRR8316907	Gold flowering stage	3.980
	SRR8316908	Gold flowering stage	4.170
SRP132670	SRR6706286	Control	6.180
	SRR6706287	Light intensity 50%	6.247
	SRR6706288	Light intensity 20%	7.668
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.093
	CNS0095593	Slightly white alabastrum(diploid) 2	5.861
	CNS0095594	Slightly white alabastrum(diploid) 3	4.476
	CNS0095595	Whole white alabastrum(diploid) 2	5.464
	CNS0095596	Whole white alabastrum(diploid) 3	5.386
	CNS0095597	Whole white alabastrum(diploid) 4	4.597
	CNS0095598	Silvery flower (diploied) 1	5.985
	CNS0095599	Silvery flower (diploied) 2	6.148
	CNS0095600	Silvery flower (diploied) 3	5.897
	CNS0095601	Golden flower (diploid) 1	3.784
	CNS0095602	Golden flower (diploid) 2	4.729
	CNS0095603	Golden flower (diploid) 3	4.242
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.485
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.139
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.205
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.807
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.711
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.023
	CNS0095610	Silvery flower (tetraploid) 1	10.038
	CNS0095611	Silvery flower (tetraploid) 2	9.645
	CNS0095612	Silvery flower (tetraploid) 3	8.241
	CNS0095613	Golden flower (tetraploid) 1	3.086
	CNS0095614	Golden flower (tetraploid) 2	5.937
	CNS0095615	Golden flower (tetraploid) 3	2.370
CRA001975	CRR073297	Stem 1	10.977
	CRR073298	Stem 2	10.890
	CRR073299	Stem 3	8.327
	CRR073300	Leaf 1	8.951
	CRR073301	Leaf 2	9.680
	CRR073302	Leaf 3	5.773
	CRR073303	Juvenile bud 1	8.057
	CRR073304	Juvenile bud 2	3.712
	CRR073305	Juvenile bud 3	7.088
	CRR073306	Third green 1	1.338
	CRR073307	Third green 2	0.435
	CRR073308	Third green 3	0.998
	CRR073309	Second white 1	1.123
	CRR073310	Second white 2	1.663
	CRR073311	Second white 3	1.412
	CRR073312	Silver flowering 1	1.507
	CRR073313	Silver flowering 2	1.761
	CRR073314	Silver flowering 3	1.750
	CRR073315	Gold flowering 1	5.493
	CRR073316	Gold flowering 2	14.081
	CRR073317	Gold flowering 3	3.752
	CRR073318	Tawny withering 1	4.312
	CRR073319	Tawny withering 2	6.071
	CRR073320	Tawny withering 3	5.567