Detail information of GWHGAAZE025078


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010934635.12.36721E-33PREDICTED: GTP-binding protein YPTM2-like isoform X2 [Elaeis guineensis]
COGYP_007376943.10.000002small GTP-binding protein domain-containing protein, Ras family
Swissprottr|P40392|RIC1_ORYSJ3E-33Ras-related protein RIC1
trEMBLtr|A0A059CIT1|A0A059CIT1_EUCGR2E-33Uncharacterized protein {ECO:0000313|EMBL:KCW77835.1}
TAIR10AT5G47200.11E-26RAB GTPase homolog 1A

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene5480498754806817-
GWHAAZE00000007mRNA5480498754806817-
GWHAAZE00000007exon5480498754805010-
GWHAAZE00000007exon5480511854805165-
GWHAAZE00000007exon5480525154805298-
GWHAAZE00000007exon5480671054806817-
GWHAAZE00000007CDS5480671054806817-
GWHAAZE00000007CDS5480525154805298-
GWHAAZE00000007CDS5480511854805165-
GWHAAZE00000007CDS5480498754805010-
Transcript Sequence

Network for GWHGAAZE025078

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00071.23Ras17701.90E-17
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07874RAB1A Autophagy - animal map04140

Gene Ontology

GO term OntologyName
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf52.814
SRR3591706second leaf25.363
SRR3591707mature leaf28.197
SRR3591708Shoot apex37.705
SRR3591709Stem42.531
SRR3591710White floral bud66.515
SRR3591711White flower54.606
SRR3591712Green floral bud67.324
SRR3591713Yellow flower97.058
SRP173429 SRR8316895Juvenile bud stage 32.216
SRR8316896Juvenile bud stage 52.956
SRR8316897Juvenile bud stage 25.563
SRR8316894Third green stage 25.824
SRR8316900Third green stage 74.292
SRR8316901Third green stage 77.644
SRR8316898Complete white stage 31.682
SRR8316899Complete white stage 76.444
SRR8316903Complete white stage 60.308
SRR8316902Silver flowering stage36.821
SRR8316904Silver flowering stage55.369
SRR8316905Silver flowering stage28.795
SRR8316906Gold flowering stage 126.285
SRR8316907Gold flowering stage 105.410
SRR8316908Gold flowering stage 112.257
SRP132670SRR6706286Control43.248
SRR6706287Light intensity 50%45.221
SRR6706288Light intensity 20%53.371
CNP0000432CNS0095592Slightly white alabastrum(diploid) 131.960
CNS0095593Slightly white alabastrum(diploid) 238.346
CNS0095594Slightly white alabastrum(diploid) 335.900
CNS0095595Whole white alabastrum(diploid) 232.895
CNS0095596Whole white alabastrum(diploid) 334.165
CNS0095597Whole white alabastrum(diploid) 431.292
CNS0095598Silvery flower (diploied) 126.075
CNS0095599Silvery flower (diploied) 226.804
CNS0095600Silvery flower (diploied) 359.540
CNS0095601Golden flower (diploid) 123.796
CNS0095602Golden flower (diploid) 269.438
CNS0095603Golden flower (diploid) 369.697
CNS0095604Slightly white alabastrum(tetraploid) 150.831
CNS0095605Slightly white alabastrum(tetraploid) 233.439
CNS0095606Slightly white alabastrum(tetraploid) 345.701
CNS0095607Whole white alabastrum(tetraploid) 147.030
CNS0095608Whole white alabastrum(tetraploid) 247.043
CNS0095609Whole white alabastrum(tetraploid) 370.170
CNS0095610Silvery flower (tetraploid) 155.768
CNS0095611Silvery flower (tetraploid) 252.377
CNS0095612Silvery flower (tetraploid) 361.187
CNS0095613Golden flower (tetraploid) 170.664
CNS0095614Golden flower (tetraploid) 263.404
CNS0095615Golden flower (tetraploid) 3113.787
CRA001975CRR073297Stem 123.503
CRR073298Stem 218.078
CRR073299Stem 316.712
CRR073300Leaf 117.826
CRR073301Leaf 214.981
CRR073302Leaf 324.393
CRR073303Juvenile bud 121.481
CRR073304Juvenile bud 232.059
CRR073305Juvenile bud 328.537
CRR073306Third green 126.929
CRR073307Third green 227.963
CRR073308Third green 324.099
CRR073309Second white 150.888
CRR073310Second white 236.957
CRR073311Second white 339.563
CRR073312Silver flowering 146.741
CRR073313Silver flowering 260.775
CRR073314Silver flowering 351.017
CRR073315Gold flowering 116.893
CRR073316Gold flowering 221.572
CRR073317Gold flowering 318.585
CRR073318Tawny withering 117.001
CRR073319Tawny withering 216.425
CRR073320Tawny withering 322.281