Gene detail

Detail information of GWHGAAZE025093

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006354655.1	2.8166E-145	PREDICTED: putative casein kinase II subunit beta-4-like [Solanum tuberosum]
Swissprot	tr\|P40228\|CSK2B_ARATH	4E-120	Casein kinase II subunit beta
trEMBL	tr\|M0ZNA5\|M0ZNA5_SOLTU	1E-145	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400004353}
TAIR10	AT5G47080.2	4E-81	casein kinase II beta chain 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	55007244	55014449	+
GWHAAZE00000007	mRNA	55007244	55014449	+
GWHAAZE00000007	exon	55007244	55007514	+
GWHAAZE00000007	exon	55011127	55011348	+
GWHAAZE00000007	exon	55013693	55013814	+
GWHAAZE00000007	exon	55014231	55014449	+
GWHAAZE00000007	CDS	55007244	55007514	+
GWHAAZE00000007	CDS	55011127	55011348	+
GWHAAZE00000007	CDS	55013693	55013814	+
GWHAAZE00000007	CDS	55014231	55014449	+

Transcript Sequence
>GWHTAAZE025127 ATGTACAGAGATCGAGGCGGTGGATCATCAAAATCAGAAATCGTCGGTGGAACTTTTGATCGGAGGCGAATCAACGATGCGTTAGACAAGCACTTGGAGAAGTCGAATTCGAGAGTTCTGAATATCAGTAAGGAAAGTTCTAGATTGCCAATGCCTTCGAGTTCTACAGCTGGAATTGGGAAATTACAGCAGCTGCAGAAACAGAAGCAGGTTGATTATCGTGATAATCGGTCTTCTTCCACTTTTACTACTAAGAACAAATGCTCCGATGAGGAATCTGAAACAGACAGTGAGGAGTCTGATGTTAGTGGTTCTGACAGGGACGATGACATATCATGGATTTCATGGTTTTGCAATTTACGAGGAAATGAGTTTTTCTGTGAAGTTGATGATGATTACATCCAAGATGATTTTAATCTTTGCGGGTTAAGCAGTCAAGTTCCTTATTATGATTATGCGCTTGATCTAATCTTGGATGTTGAGTCCTCTCATGAAGATACGTTCACCGAAGAACAGAATGAATTGGTTGAATCGGCAGCAGAGATGTTGTATGGTCTTATTCATGTCCGATACATATTGACCACCAAGGGAATGGCGACAATGGTAAAACCACAATTAGAGAAGTACAAAAACTACGACTTTGGAAGGTGTCCGAGAGTTTATTGCTGTGGACAGCCCTGCCTTCCAGTCGGTCAATCAGATATTCCTCGTTCAAGTACTGTTAAAATATACTGTCCCAGATGTGAAGATATTTACTATCCGCGATCCAAGTACCAAGGCAGTATCCTTAAGTCCTTAACAATTCACTTTTCCTGCCTCCTTTTATTTTTCTAG

Network for GWHGAAZE025093

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01214.19	CK_II_beta	112	260	2.20E-59

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03115	CSNK2B	Ribosome biogenesis in eukaryotes	map03008
		Wnt signaling pathway	map04310
		NF-kappa B signaling pathway	map04064
		Mitophagy - animal	map04137
		Mitophagy - yeast	map04139
		Adherens junction	map04520
		Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name
GO:0005956	cellular_component	protein kinase CK2 complex
GO:0019887	molecular_function	protein kinase regulator activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	31.174
	SRR3591706	second leaf	19.253
	SRR3591707	mature leaf	20.652
	SRR3591708	Shoot apex	33.108
	SRR3591709	Stem	25.963
	SRR3591710	White floral bud	23.582
	SRR3591711	White flower	30.148
	SRR3591712	Green floral bud	31.190
	SRR3591713	Yellow flower	28.201
SRP173429	SRR8316895	Juvenile bud stage	21.486
	SRR8316896	Juvenile bud stage	24.411
	SRR8316897	Juvenile bud stage	10.932
	SRR8316894	Third green stage	11.462
	SRR8316900	Third green stage	26.732
	SRR8316901	Third green stage	27.004
	SRR8316898	Complete white stage	10.194
	SRR8316899	Complete white stage	35.873
	SRR8316903	Complete white stage	17.092
	SRR8316902	Silver flowering stage	11.358
	SRR8316904	Silver flowering stage	13.326
	SRR8316905	Silver flowering stage	5.526
	SRR8316906	Gold flowering stage	20.391
	SRR8316907	Gold flowering stage	18.051
	SRR8316908	Gold flowering stage	18.687
SRP132670	SRR6706286	Control	16.013
	SRR6706287	Light intensity 50%	14.909
	SRR6706288	Light intensity 20%	17.569
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.598
	CNS0095593	Slightly white alabastrum(diploid) 2	15.464
	CNS0095594	Slightly white alabastrum(diploid) 3	11.271
	CNS0095595	Whole white alabastrum(diploid) 2	16.005
	CNS0095596	Whole white alabastrum(diploid) 3	13.352
	CNS0095597	Whole white alabastrum(diploid) 4	14.481
	CNS0095598	Silvery flower (diploied) 1	19.596
	CNS0095599	Silvery flower (diploied) 2	17.304
	CNS0095600	Silvery flower (diploied) 3	22.056
	CNS0095601	Golden flower (diploid) 1	12.521
	CNS0095602	Golden flower (diploid) 2	21.649
	CNS0095603	Golden flower (diploid) 3	22.413
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.802
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.401
	CNS0095606	Slightly white alabastrum(tetraploid) 3	35.218
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.305
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.279
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.859
	CNS0095610	Silvery flower (tetraploid) 1	18.909
	CNS0095611	Silvery flower (tetraploid) 2	21.004
	CNS0095612	Silvery flower (tetraploid) 3	16.364
	CNS0095613	Golden flower (tetraploid) 1	9.822
	CNS0095614	Golden flower (tetraploid) 2	19.264
	CNS0095615	Golden flower (tetraploid) 3	15.096
CRA001975	CRR073297	Stem 1	18.072
	CRR073298	Stem 2	16.353
	CRR073299	Stem 3	14.285
	CRR073300	Leaf 1	17.244
	CRR073301	Leaf 2	12.684
	CRR073302	Leaf 3	15.735
	CRR073303	Juvenile bud 1	15.672
	CRR073304	Juvenile bud 2	10.738
	CRR073305	Juvenile bud 3	13.111
	CRR073306	Third green 1	3.891
	CRR073307	Third green 2	3.268
	CRR073308	Third green 3	4.590
	CRR073309	Second white 1	6.774
	CRR073310	Second white 2	6.872
	CRR073311	Second white 3	8.137
	CRR073312	Silver flowering 1	5.011
	CRR073313	Silver flowering 2	5.471
	CRR073314	Silver flowering 3	6.007
	CRR073315	Gold flowering 1	10.949
	CRR073316	Gold flowering 2	22.388
	CRR073317	Gold flowering 3	15.958
	CRR073318	Tawny withering 1	14.623
	CRR073319	Tawny withering 2	13.200
	CRR073320	Tawny withering 3	18.868