Gene detail

Detail information of GWHGAAZE025098

Functional Annotation

Database	Orthologs	Annotation
Nr	KDP28894.1	hypothetical protein JCGZ_14665 [Jatropha curcas]
Swissprot	tr\|Q76E23\|IF4G_ARATH	Eukaryotic translation initiation factor 4G
trEMBL	tr\|A0A067KAP9\|A0A067KAP9_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP28894.1}
TAIR10	AT3G60240.3	eukaryotic translation initiation factor 4G

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	55080588	55090669	-
GWHAAZE00000007	mRNA	55080588	55090669	-
GWHAAZE00000007	exon	55080588	55080609	-
GWHAAZE00000007	exon	55080984	55083898	-
GWHAAZE00000007	exon	55084939	55086045	-
GWHAAZE00000007	exon	55086710	55086949	-
GWHAAZE00000007	exon	55088575	55088631	-
GWHAAZE00000007	exon	55088734	55088834	-
GWHAAZE00000007	exon	55089078	55089224	-
GWHAAZE00000007	exon	55089404	55089537	-
GWHAAZE00000007	exon	55090665	55090669	-
GWHAAZE00000007	CDS	55090665	55090669	-
GWHAAZE00000007	CDS	55089404	55089537	-
GWHAAZE00000007	CDS	55089078	55089224	-
GWHAAZE00000007	CDS	55088734	55088834	-
GWHAAZE00000007	CDS	55088575	55088631	-
GWHAAZE00000007	CDS	55086710	55086949	-
GWHAAZE00000007	CDS	55084939	55086045	-
GWHAAZE00000007	CDS	55080984	55083898	-
GWHAAZE00000007	CDS	55080588	55080609	-

Transcript Sequence
>GWHTAAZE025132 ATGTGCTATAAGAAGTCCAATAATAATGCACAAGCAGGGCAATCTCGGGTAAGCGGTGGGATTGTGAATTCAGATTCCAATAAAGCTTCTCCTGCTGGTGCTGTACAGAATGGTGCTCATTCACAACCACCATTACCTGGAGTGGCTAATGCACCAGTCACAGGGTTTACTGTCAGGCCAACTGATGTGTCAATGCAGAAAAACACCCGAGGGGTTCCAAAGGCTCCATCTTCTGGTGTTACTCCTGTTGGTTCTGAAACTCTTCGGCCCCTAACTCCCGGAAAGGGTCTTGGGGATGCATCTCATTCATTACCTCTCCAGTTTGGGTCCATACGACCTGATTTCATTAATGGAATGCAGGCATGTTCATACTCTCTGATGCATTATATACCTGCTCGAACAAGCTCAGCACCTCCTAATTTTGATGAGCAGAAACGTGACCAGGCTCGACATGATTTGTCAAAAGCGACGTCCACATTATCAATTCCAACTGGTCCTCCACAGCAATTGCTAAAGAAGGATTTGGGGGCTGTTGATCAATCTAATAATGCTGAGGCTCAGCAAATATCCAAGGATAAAAGGGATGTGCAAGTTTCAGTTGGACCCACAGTGATCCAAACCCCGAAGCATTCTATACATCCTACCTCTGGGATTTCCATGCAAGTCCCGTTTCACCAGCCACAGGTACCGGTTCAATTTGGCACCCCTAATCCACAAATGCAGGGTCAGGGCTTGACCAACACATCATTGCCAATGCCGATGCCTATGCCGATGCCAGTGCCCGTACCAGTCGGAAACCCATCTCAAGTGCAACAGCAGGTGTTTGTTCCAGGTCTTCATCCTCATCCAATGCAGTCTCAGGGGCTTATGCACCAGGGCCAGAACTTGAATTTTTCGTCTCAAATGGGTCCCCAGATGCCTCAGTTGGGCAATTTAGGAATTAACATTGGCCCACAATTCCAGCAACAGCAGGCCGGAAAATTTGCCATTCCTCGTAAAACGGTCAAGATCACACACCCGGACACTCACGAAGAGTTGAGACTTGATAAACGGACCGATACATATATGGATGGTGGGTCATCAGCCCCAAGGCCGACACATCATATGCCACCTCAGTCCCAGCCTATACCATCTTACCCACCTGCTCATCCAATCAACTACTACCCAAATTCCTACAATCCCAGTTCCCTCTTTTTTCCCCCTCAGAGCTCTCTTCCTCTAACTAGTACCCAAGTAACTCCGAGTTCTCAGGCACCACGGTTTTATAACCAGGCTACCCAGGGTCCACCCCCTCCTGTAGCTTTTATGAACCCATCTTCTCTTAACTTGTTTACGGCTAATAAAACTGGTGCCCCATTGCATGGCATTGGCGAACCTTCGATTTTGGAACATGGTCGTGGTGATGGTTATAATGTAATCTCCTTACCACAATCATCTTCAGTACAGGTGACAGTGAAACCGCCAATTAGCTCGCACGGAGAAAAGGTTTCTGATTCATCAATTTTGAGGGGCTCACCTGCTGTTAAAAAGGATAATTCACCTAAAATTCATAGGCCGAATGGGGATTCAAACCCGATTAGTCCTAAAATTCATAAGGCATCTGCTTCAGCTGCTGGTTCTGTTTCTGCAGAGACCGCCAACTCTTTGTCCTCTGTGCCTACTGAGGTTTCCACATCAGTTGTGAGTGGTAGTAGTGAAGGCACAAGAAGGGAGTTGATTATGAGGTCAAACTCCATTAAAGATGAACAGAAAAAGCCAGGCAAGAAAGGGCTTTCACTGCAGCAAAATGAGGTTGGTGGACAACCTACCTCTGCTTCAAGCTTTCCTTCTCAGTCGTTAGAACACGGCAACTCTGTCAACAGTGGAATGTGCATAAGTGTAGACGCTATAATTACTCCAACTTCATCAGGAACCAGTGGGGTAGCCCAAGAAAGTACAGGAGTCCCAGTGCAAATAACTGATAGCACTGGGGTTGGTGCTGAAATTACTGTTGATACATCCTCGGTGAATAAACCGCCAAAGAATGAAACTGCAGGAGCAAAAGAAGAAGTTGAAATTATGATGCCTGAAGAAATGAGACAAGATGAGAATAGTTCTGAGATAAATCCAGAGTCGGTTCCTTTAAACTCTTTAGAACCCGTTAATCAAACCAAACAGATCTCTGATCTCAAGGTGACAACTTCCATCAATGAGACTAAATCCCTTGAAAGTGCAGAGAGAAAGCTCGACGAGCCTATTAATGTCGGTAATTTAGTAACATCTGGTTCTACTGCAGAGGATTCTTTAAATGCTGATAAATCTTTTACTTCAGATGCTTCTTTAAGTAAATGTGATGGTGAAGGGGAAGGTACTGAAAGTACCAATAATGTCCCGCTTTCTCCTTCAGCATCAGGTTCCAAGGATAATAAACCCTTGCTAGAGTCAAATAAGTCAAAGAATACAATGGGTAAATGGAAGAAGAAGAAAAAGGAAATTCTACAAAAAGCAGATGCTGCTGGTACAACTTTCGATCTTTATAATGCTTATAAAGGTCCAGAGGAAAAGAAAGCAAGTGTACCTTCTGCAGAAAATACAGAAAGCATTAGTTCAACGCCGGCACCCGCTGTTTTTCCTCGGGAAGATGTTGTATCAAATGAAAAAAGCAGTCAGAGTAAAGCTGAGCTGGATGACTGGGAAGATGCTGCAGACATATCTACTCCAAAATTGGGTAGTCCCAATAATGGGAAACAAAATGGAACTGGATTATTGGCCAAAAAGTATTCTAGAGACTTCTTAATGAAGTTCTCAGAACAATGTATCAATCTTCCCGAGGGTTTTCAAATTACACCCGATACAGCAGAGGCTTTTGTTGTTTCAAATCTCAATATATCTCGGGATTATCCTAGCCCAGGAAGAATTATTGACCGGCCAACTGGTGGGTCCCGATTGGATCGCCGTGGAAGTGGTATGGGTGATGATGACAAGTGGAATAAAATGCCGGGCCCGCTTGCTCTAGGACGGGATATGCGGATGGATATGGGGTATGGGGGTAATGTAGTAGGGTTTCGGCTCGGACAAGGAGGGAATTATGGTGTTTTAAGAAACCCACGTGGACAGGGGTCGGTTCAGTACGCAGGTGGAATTCTATCTGGGTCGATGCAGTCCCTGGGCTCTCAGGGTCGAAATAATGCTGATTCTGACAGGTGGCAGCGTGCTACTGGTTATCAGAAGGGCTTAATTCCTTCACCTCACACTCCTTTACAGGTGATGCACAAAGCCGAGAAAAAGTATGAAGTGGGTAAAATTACAGATGAGGAACAGGCCAAACAAAGGCTGTTGAAAGGTATACTCAATAAGCTAACTCCCCAGAATTTTGAGAAACTATTTGAGCAAGTTAAACAAGTGAATATTGACAATGCTGGTACTCTCACTGGTGTTATCTCTCAAATTTTCGATAAAGCTTTAATGGAACCAACTTTTTGTGAGATGTATGCAAATTTTTGCTATTACCTTGCTGGAGAGTTGCCTGATTTTAATGAAGATAATGAGAAAATAACTTTTAAGAGGTTACTTCTGAATAAATGCCAAGAGGAATTTGAGAGAGGAGAGAGAGAGCAAGAAGAGGCAAACAGAACTGAAGAGGAAGGTGAGGCTAAACAGACTGAAGAGGAGAGAGAGGAGAAGAGAATCCAGGCCCGGAGACGAATGCTGGGTAATATAAGGCTTATTGGGGAATTGTACAAGAAGAAGATGTTGACTGAGAGAATTATGCACGAATGTATAAAGAAGTTGTTAGGTCAGTATCAAAATCCCGATGAGGAAGATGTTGAAGCTCTCTGCAAATTAATGAGCACCATTGGAGAGATTATCGATCATCCCAAAGCCAAGGAGCACATGGACGTATATTTCGATATGATGGCAAAGTTGTCTAACAACATGAAACTATCATCTAGGGTTAGGTTCATGTTGAAGGATGCCATTGATCTCAGGAAGAATAAGTGGCAGCAGAGGAGGAAAGTCGAAGGACCGAAAAAGATTGAGGAGGTGCACCGAGATGCCGCTCAAGAACGCCAGGCTCAAGCCAGTAGGCTGGCTCGGGGTCCGAGTATGGGATCTTCAGTCCGAAGGGGTCAACCCATGGACTTTGCTCCAAGAGGGTCAAATATTTTATCTTCTCCAAATTCCCAGATGGGCGGTTATCGTAACTTACCTCAGCAGCTCCGTGTTTATAACACACAGGATGTTCGGTCCGATGAGAGACACACTTTTGATAATAGAGTACTTTCTGTTCCATTGCCTCAGAAAGCCATGGGTGATGATTCAATTACCCTTGGTCCTCAAGGCGGTCTTGCAAGGGGAATGTCTAGTAGAGGACAACCATCGGTGCACAACATACCATTAGCTGATTTGCCTAGTCCCTTGGACTCTAGAAGAGTGACTGCTGGCTTGAATGGTTATGGCTCAAGAGATGATGTCATCTCCAGAAACGTGCCGGAAAGGTTTATGGGTCCATCGGCTTATGACCAGTCAAGCACACAAGAACGAAATATGAATTATGTGAATCGAGACGTAAAGAATTTAGATCGTAGTTTCAATAAATCTATGCCAACTTCACCAACCACACGATGTCAGGGGCCAACTTTAGTGCAAAATGTTCCTTTGGAAAAGGTGTGGCCTGAAGATCGTTTGCGGGATATGTCTATAGAAGCAATTAAAGAATTTTACAGGTGCATAAATCTACTTCTCTAG

Network for GWHGAAZE025098

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02854.20	MIF4G	1103	1326	1.80E-54

Protein Sequence

>GWHPAAZE025116
MCYKKSNNNAQAGQSRVSGGIVNSDSNKASPAGAVQNGAHSQPPLPGVANAPVTGFTVRPTDVSMQKNTRGVPKAPSSGVTPVGSETLRPLTPGKGLGDASHSLPLQFGSIRPDFINGMQACSYSLMHYIPARTSSAPPNFDEQKRDQARHDLSKATSTLSIPTGPPQQLLKKDLGAVDQSNNAEAQQISKDKRDVQVSVGPTVIQTPKHSIHPTSGISMQVPFHQPQVPVQFGTPNPQMQGQGLTNTSLPMPMPMPMPVPVPVGNPSQVQQQVFVPGLHPHPMQSQGLMHQGQNLNFSSQMGPQMPQLGNLGINIGPQFQQQQAGKFAIPRKTVKITHPDTHEELRLDKRTDTYMDGGSSAPRPTHHMPPQSQPIPSYPPAHPINYYPNSYNPSSLFFPPQSSLPLTSTQVTPSSQAPRFYNQATQGPPPPVAFMNPSSLNLFTANKTGAPLHGIGEPSILEHGRGDGYNVISLPQSSSVQVTVKPPISSHGEKVSDSSILRGSPAVKKDNSPKIHRPNGDSNPISPKIHKASASAAGSVSAETANSLSSVPTEVSTSVVSGSSEGTRRELIMRSNSIKDEQKKPGKKGLSLQQNEVGGQPTSASSFPSQSLEHGNSVNSGMCISVDAIITPTSSGTSGVAQESTGVPVQITDSTGVGAEITVDTSSVNKPPKNETAGAKEEVEIMMPEEMRQDENSSEINPESVPLNSLEPVNQTKQISDLKVTTSINETKSLESAERKLDEPINVGNLVTSGSTAEDSLNADKSFTSDASLSKCDGEGEGTESTNNVPLSPSASGSKDNKPLLESNKSKNTMGKWKKKKKEILQKADAAGTTFDLYNAYKGPEEKKASVPSAENTESISSTPAPAVFPREDVVSNEKSSQSKAELDDWEDAADISTPKLGSPNNGKQNGTGLLAKKYSRDFLMKFSEQCINLPEGFQITPDTAEAFVVSNLNISRDYPSPGRIIDRPTGGSRLDRRGSGMGDDDKWNKMPGPLALGRDMRMDMGYGGNVVGFRLGQGGNYGVLRNPRGQGSVQYAGGILSGSMQSLGSQGRNNADSDRWQRATGYQKGLIPSPHTPLQVMHKAEKKYEVGKITDEEQAKQRLLKGILNKLTPQNFEKLFEQVKQVNIDNAGTLTGVISQIFDKALMEPTFCEMYANFCYYLAGELPDFNEDNEKITFKRLLLNKCQEEFERGEREQEEANRTEEEGEAKQTEEEREEKRIQARRRMLGNIRLIGELYKKKMLTERIMHECIKKLLGQYQNPDEEDVEALCKLMSTIGEIIDHPKAKEHMDVYFDMMAKLSNNMKLSSRVRFMLKDAIDLRKNKWQQRRKVEGPKKIEEVHRDAAQERQAQASRLARGPSMGSSVRRGQPMDFAPRGSNILSSPNSQMGGYRNLPQQLRVYNTQDVRSDERHTFDNRVLSVPLPQKAMGDDSITLGPQGGLARGMSSRGQPSVHNIPLADLPSPLDSRRVTAGLNGYGSRDDVISRNVPERFMGPSAYDQSSTQERNMNYVNRDVKNLDRSFNKSMPTSPTTRCQGPTLVQNVPLEKVWPEDRLRDMSIEAIKEFYRCINLLL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03260	EIF4G	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0003723	molecular_function	RNA binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.932
	SRR3591706	second leaf	4.329
	SRR3591707	mature leaf	4.855
	SRR3591708	Shoot apex	6.802
	SRR3591709	Stem	7.650
	SRR3591710	White floral bud	13.789
	SRR3591711	White flower	9.589
	SRR3591712	Green floral bud	23.322
	SRR3591713	Yellow flower	9.347
SRP173429	SRR8316895	Juvenile bud stage	12.684
	SRR8316896	Juvenile bud stage	19.463
	SRR8316897	Juvenile bud stage	11.163
	SRR8316894	Third green stage	9.726
	SRR8316900	Third green stage	22.687
	SRR8316901	Third green stage	22.517
	SRR8316898	Complete white stage	4.915
	SRR8316899	Complete white stage	12.616
	SRR8316903	Complete white stage	11.058
	SRR8316902	Silver flowering stage	5.245
	SRR8316904	Silver flowering stage	9.916
	SRR8316905	Silver flowering stage	4.054
	SRR8316906	Gold flowering stage	11.866
	SRR8316907	Gold flowering stage	10.568
	SRR8316908	Gold flowering stage	12.187
SRP132670	SRR6706286	Control	16.909
	SRR6706287	Light intensity 50%	17.008
	SRR6706288	Light intensity 20%	17.039
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.055
	CNS0095593	Slightly white alabastrum(diploid) 2	6.842
	CNS0095594	Slightly white alabastrum(diploid) 3	11.000
	CNS0095595	Whole white alabastrum(diploid) 2	11.910
	CNS0095596	Whole white alabastrum(diploid) 3	13.416
	CNS0095597	Whole white alabastrum(diploid) 4	10.070
	CNS0095598	Silvery flower (diploied) 1	4.895
	CNS0095599	Silvery flower (diploied) 2	5.462
	CNS0095600	Silvery flower (diploied) 3	22.063
	CNS0095601	Golden flower (diploid) 1	4.031
	CNS0095602	Golden flower (diploid) 2	18.711
	CNS0095603	Golden flower (diploid) 3	19.158
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.740
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.503
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.567
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.077
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.228
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.484
	CNS0095610	Silvery flower (tetraploid) 1	16.790
	CNS0095611	Silvery flower (tetraploid) 2	19.273
	CNS0095612	Silvery flower (tetraploid) 3	28.347
	CNS0095613	Golden flower (tetraploid) 1	7.371
	CNS0095614	Golden flower (tetraploid) 2	17.788
	CNS0095615	Golden flower (tetraploid) 3	16.119
CRA001975	CRR073297	Stem 1	22.595
	CRR073298	Stem 2	20.047
	CRR073299	Stem 3	14.814
	CRR073300	Leaf 1	24.962
	CRR073301	Leaf 2	20.256
	CRR073302	Leaf 3	13.539
	CRR073303	Juvenile bud 1	15.135
	CRR073304	Juvenile bud 2	11.020
	CRR073305	Juvenile bud 3	18.913
	CRR073306	Third green 1	9.646
	CRR073307	Third green 2	6.739
	CRR073308	Third green 3	10.866
	CRR073309	Second white 1	4.522
	CRR073310	Second white 2	8.232
	CRR073311	Second white 3	11.609
	CRR073312	Silver flowering 1	8.281
	CRR073313	Silver flowering 2	7.760
	CRR073314	Silver flowering 3	7.792
	CRR073315	Gold flowering 1	4.531
	CRR073316	Gold flowering 2	13.103
	CRR073317	Gold flowering 3	5.080
	CRR073318	Tawny withering 1	11.752
	CRR073319	Tawny withering 2	9.261
	CRR073320	Tawny withering 3	6.981