Gene detail

Detail information of GWHGAAZE025100

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009603589.1	1.6865E-102	PREDICTED: E3 ubiquitin-protein ligase ATL4 [Nicotiana tomentosiformis]
Swissprot	tr\|Q9LY41\|ATL4_ARATH	3E-79	E3 ubiquitin-protein ligase ATL4
trEMBL	tr\|A0A068ULH1\|A0A068ULH1_COFCA	3E-102	Coffea canephora DH200=94 genomic scaffold, scaffold_38 {ECO:0000313\|EMBL:CDP09385.1}
TAIR10	AT3G60220.1	1E-53	TOXICOS EN LEVADURA 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	55116771	55118049	+
GWHAAZE00000007	mRNA	55116771	55118049	+
GWHAAZE00000007	exon	55116771	55117228	+
GWHAAZE00000007	exon	55117548	55118049	+
GWHAAZE00000007	CDS	55116771	55117228	+
GWHAAZE00000007	CDS	55117548	55118049	+

Transcript Sequence
>GWHTAAZE025134 ATGTCTCGTTTATTCTTTCCTCCACCACCGTTCCCCATCAGCGGAACCACCACCACATCCCCCTCTTCGGCATCATCTACTTCGACATCAATAATTATAGTGATAATCGTTATAGCATCGGCGGTACTCATCTCCGCTTCTCTCTACCTTCTCATCCGCTTCGTATCCCGCCGGTTCCGCCGCTCACTCCGCATCTCCGCCGAAAACAACGCCGTCTCCACCACTAACCGCGATTTCTGTGTGAAGTCGCCGCGGGAGGCCGATCTATTGGACTCGCTGCCTCTCTTCACTTTTGGCTCTGTTGTCACGAAGAAAGCAGAGGCCGGTGACTGTGCAGTTTGTTTGTCGAAGTTCGAGCCGAACGATCAGCTCCGGCTCTTGCCTTTATGCTGTCACGCTTTTCACGCCGATTGCATCGACACCTGGCTCGCTTCGAACCAGACCTGTCCTTTATGCAGGTCTTCAGTGAACCCTACGGAAGACGATGTACAGAGCAAAATCCTCGCTCCACCGGCAGCCGGAGAAGATCGAAGCAATAGCTTTCGGATCGAGATCGGAAATATTAGCCGGCGGCAATCTCCGCCGGAATCCGGCGAAGATCGGAGATCGTATTCAATCGGATCCTTCGAGTACATTGTCAACGACGGATACGAGGTCTCCGTCGAGTCCACACTTCATCGAGGAGTCTCCGACTGCACGTCCGTCGATAAGGATTCCACCGGAGTTCCGCCGCCGGGGGAGAGCTTAGCGGCGGATGTTTCCGGAAGTCAGAGTTGGCTGAGAGAATACGTAGACCGATTCTCGTCGTCCATTTTGTTATCATCGCAATCGTTTCGGAGCTCCGGCCGGTTCTTCACCGGAAGTAGTCGCCGGAGCGACGTTGCAGTGCCGGAAGATGTTGAAGCTAATAACGTCGGAGAAGAGATCAGTGAACTTTTCCGGTGGCTTTCAGGTGTATGA

Network for GWHGAAZE025100

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.7	zf-RING_2	110	153	1.80E-13

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.045
	SRR3591706	second leaf	1.891
	SRR3591707	mature leaf	1.577
	SRR3591708	Shoot apex	1.878
	SRR3591709	Stem	6.722
	SRR3591710	White floral bud	10.163
	SRR3591711	White flower	4.539
	SRR3591712	Green floral bud	4.512
	SRR3591713	Yellow flower	5.021
SRP173429	SRR8316895	Juvenile bud stage	0.672
	SRR8316896	Juvenile bud stage	1.384
	SRR8316897	Juvenile bud stage	0.223
	SRR8316894	Third green stage	1.172
	SRR8316900	Third green stage	3.406
	SRR8316901	Third green stage	3.264
	SRR8316898	Complete white stage	7.098
	SRR8316899	Complete white stage	9.670
	SRR8316903	Complete white stage	7.717
	SRR8316902	Silver flowering stage	2.772
	SRR8316904	Silver flowering stage	3.505
	SRR8316905	Silver flowering stage	1.574
	SRR8316906	Gold flowering stage	2.558
	SRR8316907	Gold flowering stage	4.022
	SRR8316908	Gold flowering stage	14.350
SRP132670	SRR6706286	Control	4.185
	SRR6706287	Light intensity 50%	4.362
	SRR6706288	Light intensity 20%	3.760
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.239
	CNS0095593	Slightly white alabastrum(diploid) 2	1.032
	CNS0095594	Slightly white alabastrum(diploid) 3	1.344
	CNS0095595	Whole white alabastrum(diploid) 2	2.228
	CNS0095596	Whole white alabastrum(diploid) 3	3.669
	CNS0095597	Whole white alabastrum(diploid) 4	2.134
	CNS0095598	Silvery flower (diploied) 1	5.096
	CNS0095599	Silvery flower (diploied) 2	2.228
	CNS0095600	Silvery flower (diploied) 3	6.609
	CNS0095601	Golden flower (diploid) 1	1.928
	CNS0095602	Golden flower (diploid) 2	7.643
	CNS0095603	Golden flower (diploid) 3	6.921
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.474
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.759
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.966
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.801
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.493
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.202
	CNS0095610	Silvery flower (tetraploid) 1	13.114
	CNS0095611	Silvery flower (tetraploid) 2	15.913
	CNS0095612	Silvery flower (tetraploid) 3	15.243
	CNS0095613	Golden flower (tetraploid) 1	1.823
	CNS0095614	Golden flower (tetraploid) 2	9.044
	CNS0095615	Golden flower (tetraploid) 3	5.903
CRA001975	CRR073297	Stem 1	4.077
	CRR073298	Stem 2	5.569
	CRR073299	Stem 3	6.499
	CRR073300	Leaf 1	13.595
	CRR073301	Leaf 2	12.628
	CRR073302	Leaf 3	14.806
	CRR073303	Juvenile bud 1	41.339
	CRR073304	Juvenile bud 2	40.092
	CRR073305	Juvenile bud 3	27.375
	CRR073306	Third green 1	4.825
	CRR073307	Third green 2	18.338
	CRR073308	Third green 3	12.519
	CRR073309	Second white 1	3.162
	CRR073310	Second white 2	1.028
	CRR073311	Second white 3	0.765
	CRR073312	Silver flowering 1	0.357
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	1.141
	CRR073315	Gold flowering 1	1.580
	CRR073316	Gold flowering 2	1.470
	CRR073317	Gold flowering 3	3.941
	CRR073318	Tawny withering 1	9.816
	CRR073319	Tawny withering 2	3.414
	CRR073320	Tawny withering 3	6.597