Detail information of GWHGAAZE025102


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP08900.17.2903E-167unnamed protein product [Coffea canephora]
COGYP_007146397.19E-21WD40 repeat-containing protein
Swissprottr|Q9FNZ2|C3H48_ARATH1E-151Zinc finger CCCH domain-containing protein 48
trEMBLtr|A0A068UK37|A0A068UK37_COFCA3E-167Coffea canephora DH200=94 genomic scaffold, scaffold_35 {ECO:0000313|EMBL:CDP08900.1}
TAIR10AT4G25440.11E-123zinc finger WD40 repeat protein 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene5513337155136478-
GWHAAZE00000007mRNA5513337155136478-
GWHAAZE00000007exon5513337155133515-
GWHAAZE00000007exon5513367455133771-
GWHAAZE00000007exon5513386855134047-
GWHAAZE00000007exon5513468055134826-
GWHAAZE00000007exon5513496655135067-
GWHAAZE00000007exon5513520955135298-
GWHAAZE00000007exon5513540655135501-
GWHAAZE00000007exon5513558855136074-
GWHAAZE00000007exon5513640255136478-
GWHAAZE00000007CDS5513640255136478-
GWHAAZE00000007CDS5513558855136074-
GWHAAZE00000007CDS5513540655135501-
GWHAAZE00000007CDS5513520955135298-
GWHAAZE00000007CDS5513496655135067-
GWHAAZE00000007CDS5513468055134826-
GWHAAZE00000007CDS5513386855134047-
GWHAAZE00000007CDS5513367455133771-
GWHAAZE00000007CDS5513337155133515-
Transcript Sequence

Network for GWHGAAZE025102

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD401792151.30E-05
PF00400.33WD403033360.0042
PF00400.33WD403413750.00019
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC3H
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046872molecular_functionmetal ion binding
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf19.824
SRR3591706second leaf13.042
SRR3591707mature leaf19.372
SRR3591708Shoot apex18.894
SRR3591709Stem29.436
SRR3591710White floral bud29.831
SRR3591711White flower29.786
SRR3591712Green floral bud26.058
SRR3591713Yellow flower30.352
SRP173429 SRR8316895Juvenile bud stage 8.354
SRR8316896Juvenile bud stage 11.659
SRR8316897Juvenile bud stage 3.272
SRR8316894Third green stage 6.097
SRR8316900Third green stage 15.457
SRR8316901Third green stage 15.896
SRR8316898Complete white stage 9.944
SRR8316899Complete white stage 21.640
SRR8316903Complete white stage 14.371
SRR8316902Silver flowering stage10.555
SRR8316904Silver flowering stage12.576
SRR8316905Silver flowering stage6.233
SRR8316906Gold flowering stage 25.598
SRR8316907Gold flowering stage 23.128
SRR8316908Gold flowering stage 24.934
SRP132670SRR6706286Control17.510
SRR6706287Light intensity 50%15.699
SRR6706288Light intensity 20%17.800
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.689
CNS0095593Slightly white alabastrum(diploid) 213.867
CNS0095594Slightly white alabastrum(diploid) 315.170
CNS0095595Whole white alabastrum(diploid) 213.237
CNS0095596Whole white alabastrum(diploid) 313.162
CNS0095597Whole white alabastrum(diploid) 413.556
CNS0095598Silvery flower (diploied) 116.862
CNS0095599Silvery flower (diploied) 212.714
CNS0095600Silvery flower (diploied) 316.761
CNS0095601Golden flower (diploid) 113.340
CNS0095602Golden flower (diploid) 215.246
CNS0095603Golden flower (diploid) 314.947
CNS0095604Slightly white alabastrum(tetraploid) 116.267
CNS0095605Slightly white alabastrum(tetraploid) 215.425
CNS0095606Slightly white alabastrum(tetraploid) 317.321
CNS0095607Whole white alabastrum(tetraploid) 112.422
CNS0095608Whole white alabastrum(tetraploid) 29.605
CNS0095609Whole white alabastrum(tetraploid) 315.512
CNS0095610Silvery flower (tetraploid) 115.033
CNS0095611Silvery flower (tetraploid) 216.866
CNS0095612Silvery flower (tetraploid) 314.969
CNS0095613Golden flower (tetraploid) 117.687
CNS0095614Golden flower (tetraploid) 217.247
CNS0095615Golden flower (tetraploid) 321.421
CRA001975CRR073297Stem 114.561
CRR073298Stem 212.681
CRR073299Stem 312.286
CRR073300Leaf 119.290
CRR073301Leaf 214.933
CRR073302Leaf 311.580
CRR073303Juvenile bud 112.056
CRR073304Juvenile bud 26.058
CRR073305Juvenile bud 313.001
CRR073306Third green 13.468
CRR073307Third green 24.016
CRR073308Third green 33.443
CRR073309Second white 12.194
CRR073310Second white 24.634
CRR073311Second white 36.364
CRR073312Silver flowering 13.413
CRR073313Silver flowering 23.349
CRR073314Silver flowering 34.100
CRR073315Gold flowering 18.169
CRR073316Gold flowering 214.306
CRR073317Gold flowering 33.597
CRR073318Tawny withering 115.024
CRR073319Tawny withering 214.840
CRR073320Tawny withering 39.057