Gene detail

Detail information of GWHGAAZE025103

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP08900.1	2.9519E-157	unnamed protein product [Coffea canephora]
COG	YP_007067253.1	2E-16	WD-40 repeat-containing protein
Swissprot	tr\|Q9FNZ2\|C3H48_ARATH	6E-149	Zinc finger CCCH domain-containing protein 48
trEMBL	tr\|A0A068UK37\|A0A068UK37_COFCA	1E-157	Coffea canephora DH200=94 genomic scaffold, scaffold_35 {ECO:0000313\|EMBL:CDP08900.1}
TAIR10	AT4G25440.1	1E-122	zinc finger WD40 repeat protein 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	55142716	55145850	+
GWHAAZE00000007	mRNA	55142716	55145850	+
GWHAAZE00000007	exon	55142716	55143222	+
GWHAAZE00000007	exon	55143310	55143405	+
GWHAAZE00000007	exon	55143511	55143600	+
GWHAAZE00000007	exon	55143736	55143837	+
GWHAAZE00000007	exon	55143966	55144172	+
GWHAAZE00000007	exon	55144909	55145121	+
GWHAAZE00000007	exon	55145441	55145538	+
GWHAAZE00000007	exon	55145700	55145850	+
GWHAAZE00000007	CDS	55142716	55143222	+
GWHAAZE00000007	CDS	55143310	55143405	+
GWHAAZE00000007	CDS	55143511	55143600	+
GWHAAZE00000007	CDS	55143736	55143837	+
GWHAAZE00000007	CDS	55143966	55144172	+
GWHAAZE00000007	CDS	55144909	55145121	+
GWHAAZE00000007	CDS	55145441	55145538	+
GWHAAZE00000007	CDS	55145700	55145850	+

Transcript Sequence
>GWHTAAZE025137 ATGGAAATAAAGACTGCGAGCAGAGTTCAAGAGAGGGCAAAAACATCTGCTTTTAACGGAGTTGGAGGAGGGCATTATGTGAGCACCAACATTGTCTGTAAATATTGGCTTGCCGGCAGATGCAACAGAAACCCATGTAGGTTTTTGCATGCAGAGTCTAATCCCCCACATCCTAAACAGCCTCGGCAATTTAAGCAGCGTAGTAGTGCGGTGAACGAAGATAATCAACATTGTTTTAGGTTAAATTTGTCCTGGAGGAACCATAAGTATTCTAGCTCCAATAATCCTCAGGTTTCTTGTGAAAGTATACTTAATTCTGAGTCCCACAGAAAGCTTTTGAAGAGTAAAGGGGCTGCTGGAAGTGAAGATATTAAAAAGACCCAACAAAAGTTGTGCAAGTTTTGGGTCACTGACAATTGTGTCCAAGGTGATAAATGCAAGGACTTGCATTCATGGTTTTCTGGTGATGGATTTTCCTTGCTTGCAAAGTTAGAAGGACACAATAAGGCTGTTACTGGGATTACTCTTCCATCTGGCTCCCAGAATCTCCTTTCCAGCAGTAAGGACAAGACCGTCCGGGTTTGGAACTGCAATACTGGTCAGTGTGATGGTATTATCAATGTTGACTGTGATAGTGGGACATTGATCAGCGAAGGTCCATGTGTATTTCTGGGGTTGCACAATGCTGTTAAGGCGTGGAACATTCAGAGTAATGATGAAATGACTCTAACTGGACCAGTCGGGTTAGTTTACTCAATGGTTGTGGGGAATGATATGCTTTTTGCTGGCACAGAGGATGGTACTATATTTTGTTGGAGATTCAATTCTGAAGCAAATAGCTCAGCAATCTTTGCATCCCTGAAGGGGCACGGTGGTGCTGTGCTTTCGCTGACTCTGGGTGCTAATAGGCTGTACTCTGGTTCTATGGACTCCACAATAAGAGTATGTTCTTGTAATCGTGATCTTTCTACCCTAAATTACTTAATGCTGTCTTTTTATATTGACTTTGCGACTTACGGAATCTTCTTCTTCCAGGTTTGGGATCTTGATTCTTTGAAGTGCAAGCTTGTACTAAACAGACACGCTAGTAGTGTGACGTCTCTCATATGCTGGGATAGCTTCTTATTATCCGGTTCCTTGGACAATACAATAAAGGTTTGGGCTGCAACTGAAAGCAGGAACTTGGAAGTCGTATATGAACACAAGGAAGAACATGGTGTTCTTGCACTTTGTGGGATACACGATGCAGAAGCAAAGCCCATCCTACTGTGCTCTCGCAAGGACAATACTGTCCGCCTATATAACTTGCCATCGTTTTATGAAAGGGGCCAGATATTCGCAACGACAGAAGTCCAGTCCGTCCAGATAGGCCCTGGGGGTCTCTTTTTTACCGGTGATGCAACCGGGCAGCTGTTTGTCTGGAAACTTCACGGAGAGGTGGCTGCAAGTGCTGATATGTCATGA

Network for GWHGAAZE025103

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	160	196	7.90E-06
PF00400.33	WD40	353	387	0.03

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.778
	SRR3591706	second leaf	0.723
	SRR3591707	mature leaf	0.571
	SRR3591708	Shoot apex	6.206
	SRR3591709	Stem	2.915
	SRR3591710	White floral bud	4.845
	SRR3591711	White flower	5.414
	SRR3591712	Green floral bud	2.638
	SRR3591713	Yellow flower	8.792
SRP173429	SRR8316895	Juvenile bud stage	1.133
	SRR8316896	Juvenile bud stage	2.494
	SRR8316897	Juvenile bud stage	0.971
	SRR8316894	Third green stage	0.674
	SRR8316900	Third green stage	2.165
	SRR8316901	Third green stage	2.025
	SRR8316898	Complete white stage	2.257
	SRR8316899	Complete white stage	3.688
	SRR8316903	Complete white stage	4.116
	SRR8316902	Silver flowering stage	2.235
	SRR8316904	Silver flowering stage	2.960
	SRR8316905	Silver flowering stage	1.400
	SRR8316906	Gold flowering stage	5.047
	SRR8316907	Gold flowering stage	6.509
	SRR8316908	Gold flowering stage	5.373
SRP132670	SRR6706286	Control	1.932
	SRR6706287	Light intensity 50%	2.222
	SRR6706288	Light intensity 20%	2.189
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.285
	CNS0095593	Slightly white alabastrum(diploid) 2	1.835
	CNS0095594	Slightly white alabastrum(diploid) 3	2.106
	CNS0095595	Whole white alabastrum(diploid) 2	2.529
	CNS0095596	Whole white alabastrum(diploid) 3	2.578
	CNS0095597	Whole white alabastrum(diploid) 4	2.930
	CNS0095598	Silvery flower (diploied) 1	3.218
	CNS0095599	Silvery flower (diploied) 2	2.204
	CNS0095600	Silvery flower (diploied) 3	4.046
	CNS0095601	Golden flower (diploid) 1	2.560
	CNS0095602	Golden flower (diploid) 2	2.740
	CNS0095603	Golden flower (diploid) 3	3.588
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.992
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.718
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.018
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.789
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.178
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.449
	CNS0095610	Silvery flower (tetraploid) 1	6.110
	CNS0095611	Silvery flower (tetraploid) 2	4.150
	CNS0095612	Silvery flower (tetraploid) 3	8.729
	CNS0095613	Golden flower (tetraploid) 1	4.135
	CNS0095614	Golden flower (tetraploid) 2	4.834
	CNS0095615	Golden flower (tetraploid) 3	3.727
CRA001975	CRR073297	Stem 1	1.836
	CRR073298	Stem 2	2.199
	CRR073299	Stem 3	1.935
	CRR073300	Leaf 1	2.543
	CRR073301	Leaf 2	1.369
	CRR073302	Leaf 3	1.439
	CRR073303	Juvenile bud 1	1.341
	CRR073304	Juvenile bud 2	0.545
	CRR073305	Juvenile bud 3	1.501
	CRR073306	Third green 1	1.555
	CRR073307	Third green 2	1.268
	CRR073308	Third green 3	1.698
	CRR073309	Second white 1	1.404
	CRR073310	Second white 2	1.872
	CRR073311	Second white 3	1.432
	CRR073312	Silver flowering 1	2.565
	CRR073313	Silver flowering 2	0.982
	CRR073314	Silver flowering 3	2.746
	CRR073315	Gold flowering 1	0.606
	CRR073316	Gold flowering 2	0.485
	CRR073317	Gold flowering 3	0.231
	CRR073318	Tawny withering 1	1.596
	CRR073319	Tawny withering 2	0.920
	CRR073320	Tawny withering 3	1.817