Gene detail

Detail information of GWHGAAZE025106

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002302483.1	0	malate oxidoreductase family protein [Populus trichocarpa]
COG	YP_001820172.1	2E-106	malate dehydrogenase
Swissprot	tr\|P37221\|MAOM_SOLTU	0	NAD-dependent malic enzyme 62 kDa isoform, mitochondrial (Precursor)
trEMBL	tr\|B9GP43\|B9GP43_POPTR	0	Malic enzyme {ECO:0000256\|RuleBase:RU003426}
TAIR10	AT2G13560.1	0	NAD-dependent malic enzyme 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	55223197	55241978	+
GWHAAZE00000007	mRNA	55223197	55241978	+
GWHAAZE00000007	exon	55223197	55223393	+
GWHAAZE00000007	exon	55224000	55224096	+
GWHAAZE00000007	exon	55224665	55224783	+
GWHAAZE00000007	exon	55226648	55226815	+
GWHAAZE00000007	exon	55232683	55232743	+
GWHAAZE00000007	exon	55233546	55233649	+
GWHAAZE00000007	exon	55233970	55234053	+
GWHAAZE00000007	exon	55234238	55234321	+
GWHAAZE00000007	exon	55235024	55235130	+
GWHAAZE00000007	exon	55235852	55235963	+
GWHAAZE00000007	exon	55236597	55236710	+
GWHAAZE00000007	exon	55237717	55237789	+
GWHAAZE00000007	exon	55237865	55237951	+
GWHAAZE00000007	exon	55239244	55239298	+
GWHAAZE00000007	exon	55239414	55239485	+
GWHAAZE00000007	exon	55240559	55240621	+
GWHAAZE00000007	exon	55240700	55240814	+
GWHAAZE00000007	exon	55241904	55241978	+
GWHAAZE00000007	five_prime_UTR	55223197	55223225	+
GWHAAZE00000007	CDS	55223226	55223393	+
GWHAAZE00000007	CDS	55224000	55224096	+
GWHAAZE00000007	CDS	55224665	55224783	+
GWHAAZE00000007	CDS	55226648	55226815	+
GWHAAZE00000007	CDS	55232683	55232743	+
GWHAAZE00000007	CDS	55233546	55233649	+
GWHAAZE00000007	CDS	55233970	55234053	+
GWHAAZE00000007	CDS	55234238	55234321	+
GWHAAZE00000007	CDS	55235024	55235130	+
GWHAAZE00000007	CDS	55235852	55235963	+
GWHAAZE00000007	CDS	55236597	55236710	+
GWHAAZE00000007	CDS	55237717	55237789	+
GWHAAZE00000007	CDS	55237865	55237951	+
GWHAAZE00000007	CDS	55239244	55239298	+
GWHAAZE00000007	CDS	55239414	55239485	+
GWHAAZE00000007	CDS	55240559	55240621	+
GWHAAZE00000007	CDS	55240700	55240814	+
GWHAAZE00000007	CDS	55241904	55241978	+

Transcript Sequence
>GWHTAAZE025140 TTTCCAGGGTTTCATTCTGATTCGCATCAATGTCCAACTTCTCTCATAAGATGAGGCTATCCTCATCTCTGATCAAACGCTTACACCAAAAAATCACTGATTTTAGTTCCAGATCTTTCACTACAACCGAAGGTCACCGTCCCACCATTGTTCACAAGCGTAGTATTGATATTCTTCACGATCCCTGGTTCAACAAGGGAACTGCATTTTCCATGACGGAGCGAGATCGTCTTGATCTGCGAGGACTTCTGCCTCCAAATGTCATGTCTTCAGACCAGCAAATTGAACGTTTTATGGAAGACCTGAAAAGGCTTCAAGTGGTTGCCAGGGACGGACCATCTGACCCAAATGCTTTGGCCAAGTGGCGAATACTTAACCGGTTGCATGACAGAAATGAAACAATGTATTACAAGGTCCTAATTGCTAACATTGAGGAATATGCACCTATAGTTTATACTCCTACAGTTGGTCTTGTTTGCCAGAACTATAGTGGACTGTTTAGAAGGCCAAGGGGGATGTATTTTAGTGCTGAAGACCGTGGAGAAATGATGTCAATGGTTTATAACTGGCCGGCTGATCAGGTACTTCCTGTAATGATTGATGTCGGAACTAACAATGAGAAGCTTCTAAAAGACCCATTGTATTTAGGATTACAAGAACATCGCCTTGATGGAGAGGAATATATAGCAGTTATCGATGAATTCATGGAGGCTGTGTTCACTCGTTGGCCGCACGTGATTGTACAGATGCATTGGATCCTAGACAAGCTTGTGTTGGTTGGGGATATATGGGTTGGTGAGGGTTTTCATTTGAAGCGGAAAATGAAACGGTTTGAAGATTTTCAAAGCAAGTGGGCCTTCAAGTTATTGCAGCGGTACAGAAATACCTACAGAATGTTTAATGATGATGTTCAGGGAACAGCGGGAGTTGCTATTGCCGGTCTTCTGGGAGCTGTAAGAGCACAAGGAAAGGCAATGATTGACTTTCCGAAGCAGAAAATTGTTGTTGCTGGAGCTGGAAGTGCAGGAATAGGTGTTCTCAATGCTGCTAGGAAAACAATGGCAAGAATGTTAGGAAATAATGAATCTGCTTTCGAGAGTGCCCGTAGTCAATTCTGGGTAGTCGATGCCAAGGGCCTCATCACAGAGGAGCGTGAAGATATAGACCCAGATGCCCAGCCGTTTGCGAGAAAGACCAAAGAAATTAGCCGTCAAGGACTGAGAGAAGGGGCAAGTCTTGCAGAAGTGGTATTGGAGGCCCTTAAAGGTTCAACATCAACTAGACCAGCAATATTCGCAATGTCGAACCCTACCAAGAATGCCGAATGCACTCCAGAAGAAGCCTTTTCCATTGTGGGAGACAACATTGTATTTGCAAGTGGAAGCCCATTTTGTGATGTGGATCTGGGAAATGGTCATATTGGTCATTGCAACCAAGGAAACAACATGTACCTGTTCCCTGGTATCGGACTTGGTACTCTTTTATCGGGCTCTAGGGTCGTCTCTGATGGCATGTTACAGGCTGCAGCTGAGTGTCTAGCTGCATATATGACAGAAGAGGAGGTTCTCAAAGGGATCATATACCCTTCAATATCCAGCATACGCGATATAACGAAGGAGGTAGCTGCAGCTGTGATCAAGGAAGCCATTGAAGAGGATCTGGCAGAAGGTTATCGCGACATGGATGCCCGAGAGCTTTGTAAACTTAGTCGGGAGGAAATTGTTACTTATGTTAAGGACAATATGTGGACACCAGAATACCCAACTTTAGTTTTCAAGAAAGATTGA

Network for GWHGAAZE025106

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00390.20	malic	119	185	9.00E-18
PF03949.16	Malic_M	404	540	6.90E-47

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00028	E1.1.1.39	Metabolic pathways	map01100
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Pyruvate metabolism	map00620
		Carbon fixation in photosynthetic organisms	map00710

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0004471	molecular_function	malate dehydrogenase (decarboxylating) (NAD+) activity
GO:0004470	molecular_function	malic enzyme activity
GO:0051287	molecular_function	NAD binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	155.513
	SRR3591706	second leaf	96.063
	SRR3591707	mature leaf	98.106
	SRR3591708	Shoot apex	93.083
	SRR3591709	Stem	88.839
	SRR3591710	White floral bud	71.341
	SRR3591711	White flower	67.112
	SRR3591712	Green floral bud	95.210
	SRR3591713	Yellow flower	39.638
SRP173429	SRR8316895	Juvenile bud stage	77.284
	SRR8316896	Juvenile bud stage	96.561
	SRR8316897	Juvenile bud stage	47.683
	SRR8316894	Third green stage	44.647
	SRR8316900	Third green stage	114.423
	SRR8316901	Third green stage	115.599
	SRR8316898	Complete white stage	46.831
	SRR8316899	Complete white stage	196.619
	SRR8316903	Complete white stage	72.210
	SRR8316902	Silver flowering stage	27.647
	SRR8316904	Silver flowering stage	36.882
	SRR8316905	Silver flowering stage	16.692
	SRR8316906	Gold flowering stage	39.006
	SRR8316907	Gold flowering stage	36.716
	SRR8316908	Gold flowering stage	50.068
SRP132670	SRR6706286	Control	174.081
	SRR6706287	Light intensity 50%	169.395
	SRR6706288	Light intensity 20%	186.947
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	61.413
	CNS0095593	Slightly white alabastrum(diploid) 2	60.298
	CNS0095594	Slightly white alabastrum(diploid) 3	52.672
	CNS0095595	Whole white alabastrum(diploid) 2	50.298
	CNS0095596	Whole white alabastrum(diploid) 3	43.435
	CNS0095597	Whole white alabastrum(diploid) 4	47.423
	CNS0095598	Silvery flower (diploied) 1	78.353
	CNS0095599	Silvery flower (diploied) 2	74.899
	CNS0095600	Silvery flower (diploied) 3	85.916
	CNS0095601	Golden flower (diploid) 1	77.819
	CNS0095602	Golden flower (diploid) 2	83.308
	CNS0095603	Golden flower (diploid) 3	81.191
	CNS0095604	Slightly white alabastrum(tetraploid) 1	67.573
	CNS0095605	Slightly white alabastrum(tetraploid) 2	52.837
	CNS0095606	Slightly white alabastrum(tetraploid) 3	162.717
	CNS0095607	Whole white alabastrum(tetraploid) 1	39.411
	CNS0095608	Whole white alabastrum(tetraploid) 2	30.893
	CNS0095609	Whole white alabastrum(tetraploid) 3	96.932
	CNS0095610	Silvery flower (tetraploid) 1	90.672
	CNS0095611	Silvery flower (tetraploid) 2	114.014
	CNS0095612	Silvery flower (tetraploid) 3	54.359
	CNS0095613	Golden flower (tetraploid) 1	24.070
	CNS0095614	Golden flower (tetraploid) 2	59.640
	CNS0095615	Golden flower (tetraploid) 3	28.675
CRA001975	CRR073297	Stem 1	95.523
	CRR073298	Stem 2	88.792
	CRR073299	Stem 3	82.893
	CRR073300	Leaf 1	95.523
	CRR073301	Leaf 2	92.646
	CRR073302	Leaf 3	82.968
	CRR073303	Juvenile bud 1	73.702
	CRR073304	Juvenile bud 2	61.661
	CRR073305	Juvenile bud 3	107.198
	CRR073306	Third green 1	39.122
	CRR073307	Third green 2	28.963
	CRR073308	Third green 3	38.530
	CRR073309	Second white 1	27.071
	CRR073310	Second white 2	17.812
	CRR073311	Second white 3	11.548
	CRR073312	Silver flowering 1	11.365
	CRR073313	Silver flowering 2	13.179
	CRR073314	Silver flowering 3	9.852
	CRR073315	Gold flowering 1	45.245
	CRR073316	Gold flowering 2	77.223
	CRR073317	Gold flowering 3	67.989
	CRR073318	Tawny withering 1	71.302
	CRR073319	Tawny withering 2	49.561
	CRR073320	Tawny withering 3	60.762