Gene detail

Detail information of GWHGAAZE025108

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011076712.1	5.05888E-33	PREDICTED: F-box/FBD/LRR-repeat protein At5g53840-like isoform X2 [Sesamum indicum]
Swissprot	tr\|Q9FWZ1\|FBL13_ARATH	0.000000002	F-box/LRR-repeat protein 13
trEMBL	tr\|A0A067KLZ8\|A0A067KLZ8_JATCU	2E-30	Uncharacterized protein {ECO:0000313\|EMBL:KDP32824.1}
TAIR10	AT1G69630.1	0.000000005	F-box/RNI-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	55270504	55272123	+
GWHAAZE00000007	mRNA	55270504	55272123	+
GWHAAZE00000007	exon	55270504	55270760	+
GWHAAZE00000007	exon	55271081	55271363	+
GWHAAZE00000007	exon	55271455	55271598	+
GWHAAZE00000007	exon	55271693	55272123	+
GWHAAZE00000007	CDS	55270504	55270760	+
GWHAAZE00000007	CDS	55271081	55271363	+
GWHAAZE00000007	CDS	55271455	55271598	+
GWHAAZE00000007	CDS	55271693	55271989	+
GWHAAZE00000007	three_prime_UTR	55271990	55272123	+

Transcript Sequence
>GWHTAAZE025142 ATGAGTAGAAGTATACATTCGGCTGATCGGTTCAGTGGGTTGCCAGAGGACATTCTTGTAACCATTCTGTCCCGCCTGCCAATGAAAGAAGCAGCACGTACCACCATACTCTCCCATAGATGGAGAAACTTATGGACGCACACCACTGGTACCTTGGACTTTGATGGTTCAAACATTTTATGGAAACTTAAGCTGAATTTTGAGTCGGGGATGATGGACACGGAAATTGAGCCGTACAGGCCCGAGTACATAAGCTGGTTGCCATGCCCGGTTGGTGTGAAAGTTTCTGCTGCATCTCTGAAGCTGAAGTACTTGGAGATAATCCGCTGCGACAACGTGGAATTTTCAGATATTTCGTGGATAAATCTCACATCGTTGACATACTCTGGACCAGTAGCAAGACTTTGTTTCAAGACTGCTCCAAATCTTACCGATATTTCATTTGGAGGAGCATATGGTGGAGACATTGTTCAGAGATTCCATAACCTTCCGATCCCTCTCTCACGCATAGAAAAACTTAAGTTGCATTTAGTTAGTCCTGATTTTGTTGGGTTCAGCGAATTCCCTGAATTAAAGAACCTCAAGCAACTAGAATTGACATTGATAGCAAGGGATCGATTGGGGCTCCTTTCTTGCACTTCACTCCTAAAGGAATGCCCAATGTTATGTAGACTTTATGTGGAGTTCTATTGGGTTGAGGACATTGAATTAACAAGTCTACAAACTAAAGAATGCGGGGTTAAAAGTCTCGAGTTTGTTGAATTGGCCGGCTTTCGTGGGAGTAATGCCGATGCGGAGCTGGCTGTGTGTCTCAGTCAAAATGCTCTGGCTCTTAAGAAGATTACAATTGACACTCGCAATCCTATTTATTTGGGAACTCCATTGGATGTATTGGACGAAGAGGACGGCACCGCCAAAGAGTGTGCGAAGATTCTGTTGACTGCGCTACTACCTCCAGAGGTTGAATTTCTCATACTTTGAGGAGGGTGGCCTTGGTTCATTGATATTATCAAGCTTTGATGGGTTTAGGTCCCATGTCTAATTTAAAGGAACCTGTAACTAAATCGAACTCAAGTGGTTTGATGTTTTATATTATTGTAACATGATTACGAAGT

Network for GWHGAAZE025108

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0228

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	10	46	7.70E-06
PF08387.11	FBD	244	283	5.80E-06

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	2.175
	SRR8316896	Juvenile bud stage	2.188
	SRR8316897	Juvenile bud stage	1.761
	SRR8316894	Third green stage	0.767
	SRR8316900	Third green stage	3.604
	SRR8316901	Third green stage	3.759
	SRR8316898	Complete white stage	1.988
	SRR8316899	Complete white stage	7.545
	SRR8316903	Complete white stage	4.309
	SRR8316902	Silver flowering stage	2.306
	SRR8316904	Silver flowering stage	3.755
	SRR8316905	Silver flowering stage	1.460
	SRR8316906	Gold flowering stage	6.111
	SRR8316907	Gold flowering stage	5.497
	SRR8316908	Gold flowering stage	4.297
SRP132670	SRR6706286	Control	2.140
	SRR6706287	Light intensity 50%	2.190
	SRR6706288	Light intensity 20%	2.053
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.138
	CNS0095593	Slightly white alabastrum(diploid) 2	2.161
	CNS0095594	Slightly white alabastrum(diploid) 3	2.385
	CNS0095595	Whole white alabastrum(diploid) 2	1.714
	CNS0095596	Whole white alabastrum(diploid) 3	4.015
	CNS0095597	Whole white alabastrum(diploid) 4	2.313
	CNS0095598	Silvery flower (diploied) 1	4.153
	CNS0095599	Silvery flower (diploied) 2	2.509
	CNS0095600	Silvery flower (diploied) 3	4.041
	CNS0095601	Golden flower (diploid) 1	3.700
	CNS0095602	Golden flower (diploid) 2	4.530
	CNS0095603	Golden flower (diploid) 3	4.415
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.930
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.369
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.305
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.700
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.191
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.074
	CNS0095610	Silvery flower (tetraploid) 1	8.152
	CNS0095611	Silvery flower (tetraploid) 2	8.881
	CNS0095612	Silvery flower (tetraploid) 3	11.918
	CNS0095613	Golden flower (tetraploid) 1	9.239
	CNS0095614	Golden flower (tetraploid) 2	8.463
	CNS0095615	Golden flower (tetraploid) 3	9.290
CRA001975	CRR073297	Stem 1	1.838
	CRR073298	Stem 2	1.775
	CRR073299	Stem 3	1.124
	CRR073300	Leaf 1	2.131
	CRR073301	Leaf 2	2.122
	CRR073302	Leaf 3	0.967
	CRR073303	Juvenile bud 1	0.876
	CRR073304	Juvenile bud 2	0.674
	CRR073305	Juvenile bud 3	1.245
	CRR073306	Third green 1	0.602
	CRR073307	Third green 2	0.821
	CRR073308	Third green 3	1.054
	CRR073309	Second white 1	0.670
	CRR073310	Second white 2	1.298
	CRR073311	Second white 3	1.770
	CRR073312	Silver flowering 1	0.222
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.441
	CRR073315	Gold flowering 1	1.936
	CRR073316	Gold flowering 2	2.722
	CRR073317	Gold flowering 3	1.333
	CRR073318	Tawny withering 1	2.039
	CRR073319	Tawny withering 2	2.313
	CRR073320	Tawny withering 3	2.162