Gene detail

Detail information of GWHGAAZE025117

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010097720.1	2.3274E-167	3-hydroxyisobutyryl-CoA hydrolase 1 [Morus notabilis]
COG	YP_421924.1	6E-61	enoyl-CoA hydratase/carnithine racemase
Swissprot	tr\|Q9LKJ1\|HIBC1_ARATH	3E-154	3-hydroxyisobutyryl-CoA hydrolase 1
trEMBL	tr\|W9RDH3\|W9RDH3_9ROSA	9E-168	3-hydroxyisobutyryl-CoA hydrolase 1 {ECO:0000313\|EMBL:EXB70675.1}
TAIR10	AT5G65940.1	8E-124	beta-hydroxyisobutyryl-CoA hydrolase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	55555848	55562551	+
GWHAAZE00000007	mRNA	55555848	55562551	+
GWHAAZE00000007	exon	55555848	55555914	+
GWHAAZE00000007	exon	55556057	55556140	+
GWHAAZE00000007	exon	55556888	55556972	+
GWHAAZE00000007	exon	55558206	55558291	+
GWHAAZE00000007	exon	55559131	55559252	+
GWHAAZE00000007	exon	55559512	55559572	+
GWHAAZE00000007	exon	55559763	55559861	+
GWHAAZE00000007	exon	55560649	55560750	+
GWHAAZE00000007	exon	55561435	55561476	+
GWHAAZE00000007	exon	55562061	55562551	+
GWHAAZE00000007	five_prime_UTR	55555848	55555890	+
GWHAAZE00000007	CDS	55555891	55555914	+
GWHAAZE00000007	CDS	55556057	55556140	+
GWHAAZE00000007	CDS	55556888	55556972	+
GWHAAZE00000007	CDS	55558206	55558291	+
GWHAAZE00000007	CDS	55559131	55559252	+
GWHAAZE00000007	CDS	55559512	55559572	+
GWHAAZE00000007	CDS	55559763	55559861	+
GWHAAZE00000007	CDS	55560649	55560750	+
GWHAAZE00000007	CDS	55561435	55561476	+
GWHAAZE00000007	CDS	55562061	55562198	+
GWHAAZE00000007	three_prime_UTR	55562199	55562551	+

Transcript Sequence
>GWHTAAZE025151 AGGTGCAAAATATTTCTGGAAGGAATTCATCTTGAACTATGTGATGGCAACATACAACAAGCCCCAGGTTTCTATTCTTTATGGAATTGTCATGGGAGGTGGAGCAGGTGCTTCAATACATGGTAGATTCCGAGTTGCAACAGAGAATTCGGTTTTTGCAATGCCAGAAACGGCTTTGGGACTCTTCCCTGATGTAGGGGCCTCTTATTACTTATCAAGACTCCCTGGATTCTTCGGAGAATATGTTGGTCTTGCTGGTGCTAGGTTGGATGGTGCTGAGATGCTTGCATGTGGCCTTGCAACTCACTTTGTGCCCACAGAGAGACTATCAATGTTAGAAGAGGCACTAAACAAGGTAGACTCAAGTGATCCCACAGTTATTTCTGGCATTATTAGTGAATTCTCTCAGTATCCTAATTTGAAAGAGAAGAGTGCTTATTACCGGATGGATATTATTGATAGGTGTTTCTCTCGAAGAACGGTTGAAGATATTTTATCTGCCTTAGAAATCGAGGCGAAAAACAGCAAGGACGATTGGATCTCTACAACCCTACAATCATTGAATAAAGCATCCCCTATGAGTCTTAAAATTTCTCTTAGATCGATTAGAGAAGGGAGACTCCAAGGTGTTGGCCAATGCCTTTTGCGAGAGTACAGAATGGTTTGTCATGTCATGAGAGGGGAGGTCAGCAAGGATTTCATTGAGGGCTGTAGGGCTATACTATTGGACAAGGATAGAAACCCGAAGTGGAATCCTTCTAAACTAGAACAAGTCAGCGACGAAATGGTTGACTGTTACTTCTCCAAGGTGGATGATGAAGAATGGGAAGATCTAAAACTCCTTCCCAGGTCAAACTTGCCTGCACATGCCATTGCGAAGCTCTAGTTTATCATTTAACAAGATACTGCAATTTGGACAGCCCCTCCTTGAATAATTCAATCAGGTAATTTTCTCAAGATATCCCATTGTGTTAGGTTACCATATAAGTGAATTTGGTTATTTCTAAGACTATCATAGGAAAAGTATTTAAGGCGAAAAATAAGAAATATTTAGAATAAATTGCAATAGATATGATACGCATGAATACATGACGTGTTAAAGGTTGGGCATTTGCGATTTTTAAGATCATTTGTTCACATTGCCATCATATCTACTTTGAATTTGTATTTACACCCAGCGTTAGCAATTGACCTGTAGGTCTGGGGTGTGTAATTTGTACTATTTAGGATTCGATTTGT

Network for GWHGAAZE025117

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16113.6	ECH_2	1	253	1.90E-91

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05605	HIBCH	Metabolic pathways	map01100
		Carbon metabolism	map01200
		Propanoate metabolism	map00640
		Valine, leucine and isoleucine degradation	map00280
		beta-Alanine metabolism	map00410

Gene Ontology

GO term	Ontology	Name
GO:0003860	molecular_function	3-hydroxyisobutyryl-CoA hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.498
	SRR3591706	second leaf	20.318
	SRR3591707	mature leaf	17.880
	SRR3591708	Shoot apex	21.614
	SRR3591709	Stem	31.666
	SRR3591710	White floral bud	23.828
	SRR3591711	White flower	28.902
	SRR3591712	Green floral bud	21.989
	SRR3591713	Yellow flower	23.433
SRP173429	SRR8316895	Juvenile bud stage	22.345
	SRR8316896	Juvenile bud stage	30.848
	SRR8316897	Juvenile bud stage	11.935
	SRR8316894	Third green stage	13.264
	SRR8316900	Third green stage	39.447
	SRR8316901	Third green stage	36.072
	SRR8316898	Complete white stage	21.928
	SRR8316899	Complete white stage	52.618
	SRR8316903	Complete white stage	28.109
	SRR8316902	Silver flowering stage	12.560
	SRR8316904	Silver flowering stage	16.318
	SRR8316905	Silver flowering stage	7.024
	SRR8316906	Gold flowering stage	21.921
	SRR8316907	Gold flowering stage	23.095
	SRR8316908	Gold flowering stage	32.210
SRP132670	SRR6706286	Control	24.119
	SRR6706287	Light intensity 50%	25.878
	SRR6706288	Light intensity 20%	30.453
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	23.602
	CNS0095593	Slightly white alabastrum(diploid) 2	25.660
	CNS0095594	Slightly white alabastrum(diploid) 3	23.322
	CNS0095595	Whole white alabastrum(diploid) 2	19.956
	CNS0095596	Whole white alabastrum(diploid) 3	20.988
	CNS0095597	Whole white alabastrum(diploid) 4	17.483
	CNS0095598	Silvery flower (diploied) 1	24.168
	CNS0095599	Silvery flower (diploied) 2	22.364
	CNS0095600	Silvery flower (diploied) 3	31.582
	CNS0095601	Golden flower (diploid) 1	24.042
	CNS0095602	Golden flower (diploid) 2	27.570
	CNS0095603	Golden flower (diploid) 3	25.646
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.864
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.615
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.500
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.831
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.690
	CNS0095609	Whole white alabastrum(tetraploid) 3	25.412
	CNS0095610	Silvery flower (tetraploid) 1	38.933
	CNS0095611	Silvery flower (tetraploid) 2	38.180
	CNS0095612	Silvery flower (tetraploid) 3	41.471
	CNS0095613	Golden flower (tetraploid) 1	24.006
	CNS0095614	Golden flower (tetraploid) 2	32.632
	CNS0095615	Golden flower (tetraploid) 3	25.138
CRA001975	CRR073297	Stem 1	15.223
	CRR073298	Stem 2	14.674
	CRR073299	Stem 3	13.386
	CRR073300	Leaf 1	16.784
	CRR073301	Leaf 2	17.260
	CRR073302	Leaf 3	15.957
	CRR073303	Juvenile bud 1	17.097
	CRR073304	Juvenile bud 2	15.917
	CRR073305	Juvenile bud 3	15.112
	CRR073306	Third green 1	7.637
	CRR073307	Third green 2	8.164
	CRR073308	Third green 3	8.299
	CRR073309	Second white 1	5.171
	CRR073310	Second white 2	5.126
	CRR073311	Second white 3	4.831
	CRR073312	Silver flowering 1	2.872
	CRR073313	Silver flowering 2	1.853
	CRR073314	Silver flowering 3	0.819
	CRR073315	Gold flowering 1	12.135
	CRR073316	Gold flowering 2	15.129
	CRR073317	Gold flowering 3	6.330
	CRR073318	Tawny withering 1	12.976
	CRR073319	Tawny withering 2	13.756
	CRR073320	Tawny withering 3	12.379