Gene detail

Detail information of GWHGAAZE025119

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009607049.1	0	PREDICTED: protein NRT1/ PTR FAMILY 7.3-like [Nicotiana tomentosiformis]
COG	YP_008149431.1	7E-28	hypothetical protein SCE1572_14985
Swissprot	tr\|Q9LQL2\|PTR14_ARATH	0	Protein NRT1/ PTR FAMILY 7.3
trEMBL	tr\|M1C8B9\|M1C8B9_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400061974}
TAIR10	AT1G32450.1	0	nitrate transporter 1.5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	55608203	55629718	-
GWHAAZE00000007	mRNA	55608203	55629718	-
GWHAAZE00000007	exon	55608203	55608659	-
GWHAAZE00000007	exon	55609388	55609822	-
GWHAAZE00000007	exon	55609933	55610495	-
GWHAAZE00000007	exon	55610841	55611058	-
GWHAAZE00000007	exon	55611260	55611330	-
GWHAAZE00000007	exon	55624270	55624358	-
GWHAAZE00000007	exon	55626216	55626618	-
GWHAAZE00000007	exon	55627314	55627748	-
GWHAAZE00000007	exon	55628487	55629043	-
GWHAAZE00000007	exon	55629195	55629412	-
GWHAAZE00000007	exon	55629633	55629718	-
GWHAAZE00000007	five_prime_UTR	55629633	55629718	-
GWHAAZE00000007	five_prime_UTR	55629342	55629412	-
GWHAAZE00000007	CDS	55629195	55629341	-
GWHAAZE00000007	CDS	55628487	55629043	-
GWHAAZE00000007	CDS	55627314	55627748	-
GWHAAZE00000007	CDS	55626216	55626618	-
GWHAAZE00000007	CDS	55624270	55624358	-
GWHAAZE00000007	CDS	55611260	55611330	-
GWHAAZE00000007	CDS	55610841	55611058	-
GWHAAZE00000007	CDS	55609933	55610495	-
GWHAAZE00000007	CDS	55609388	55609822	-
GWHAAZE00000007	CDS	55608203	55608659	-

Transcript Sequence
>GWHTAAZE025153 CACTCTTGATGGAAGTGTTGATCGAAATGGTAAACCTGCAGTGCGCGGAAGAAGTGGAAATTGGACTGCTGCCATTCTCTTACTAGTAAACCAAGGGCTAGCAACACTAGCATTCTTTGGGGTGGGGGTAAACTTGGTGTTGTTTTTGACAAGAGTGATGGAACAAGACAATGCGGAGGCAGCCAACAACGTTAGTAAATGGACCGGCACTGTTTATATCTTCTCTCTCCTCGGTGCCTTTCTTAGCGATTCCTATTGGGGTCGTTACAAGACTTGTGCCATCTTTCAAGCCATCTTTGTTCTTGGTCTTGCTTCATTGTCACTTACATCGTATATTTTCTTAATCAAGCCGAATGGATGTGGGAGTGAAAAAACCCCATGCGGATCCCATTCAATCCTCGAGATCGGGATGTTCTATGTTTCAATTTACCTAATTGCCCTCGGAAATGGAGGGTACCAACCCAATATAGCTACCCTAGGGGCGGACCAATTTGACGAGGACCACCCTAAGGAAGGATACTCAAAATTGTCCTTCTTTAGCTACTTCTACTTGGCCTTGAACTTGGGCTCTCTTTTTTCAAACACCATATTGGGCTATTTTGAGGACAAAGGAATGTGGGCCCTTGGATTTTGGGCCTCAACCGGCTCTGGAATTGTGGCATTGGTTTTGTTCCTTATTGGTACCCCTAGGTATAGGCACTTCACACCTAGGGGCAATCCACTGTCTAGATTTGGCCACGTGGTGGTTGCTGCAGCTAGGAAGTGGACGGTCAAGATCCCGCCACGTGGAGAGGAACTATATGAGGTTGATGGGGATGAAAGTAACGGGGGAAGGAAAATACTTCATACTCGTGGATTCAAATTCTTGGATAGAGCGGCAGTTATCACCTCAAAGGAGACGTACACTTCAAAGAAAAATGAAGTAAATGACGACCCATGGCACCTATGCACAGTGACACAAGTGGAAGAAGTAAAATGCATACTAAGGCTTCTCCCAATTTGGCTATGTACAATCCTGTATTCCGTGCTTTTCACTCAAATGGCCTCTCTTTTCGTCGAACAAGGCGCCGCCATGAAAACTACAATTTCGACCTTCCACATTCCCCCCGCAGGCATGTCTATTTTCGACATTCTTAGTGTCGCCGCTTTTATTTTCATTTATCGACGAGTTTTAGACCCACTGGTTGCGAAGTTGAAGAAATATCCTAACGGACTCACGGAACTTCGAAGGATGGGAATCGGGCTCATTATAGCTATAGTGGCGATAGTTATAGCTGGCATTGTAGAGCATTTCAGGTTAAAGTACGCAAAGAAAGACTGCCCAACCTGCACAAACTCAAGCACATTAAGCATACTATGGCAAATCCCACAATATGTACTAATAGGAGCATCAGAGGTATTTATGTATGTGGGTCAATTAGAGTTCTTCAACAAGGAAGCACCAGAAGGATTAAAGAGCTTTGGTAGTGCACTTTGTATGACTTCAATTTCACTTGGCAATTATGTGAGTAGTTTACTAGTCACTATTGTGATGAGAATCTCAACAAAAAGTGACAAAATTCCAGGCTGGATACCAAGTAACCTTAACAAGGGCCATTTGGACAGGTTTTATTTCCTCTTGGCCCTTTTCACTACAGCTGATTTTGTGGTGTACATTTTGTGTGCCAAGTGGTACCAAAATATTAGGTTTGTAGGAAAGGTGGCTGCTTTGGACGGGATCACCAAATCAAGGAAAGTTAGAGAGGAGATCGGTGGCTCACGGTGGAGGCGTGGAGTGAAGCGGAAAAGTGTTGATAGAAATGGTAAACCTGCAGTGCGTGGAAGAAGTGGAAAATGGACTGCTGGCATTCTGTTACTTGTGAACCAAGGGCTAGCAACACTAGCATTTTTTGGGGTTGGTGTAAACTTGGTGCTATTTCTAACAAGAGTGATAGGACAAGACAATGCGGAGGCAGCAAATAATGTTAGCAAATGGACTGGCACTGTCTACATCTTTTCTCTCCTCGGCGCTTTTCTTAGCGATTCTTATTGGGGTCGTTACAAGACTTGTGCCGTGTTTCAAGTTATCTTTGTTCTTGGTCTTGTTTCGTTATCACTTACATCATATATATTCTTAATCAAGCCAACTGGATGTGGGAGCGAAAAAACTCCATGTGGGTCCCACTCATCCTTCGAGATTGCGATGTTCTACACGTCAATTTACCTAATTGCCCTTGGAAATGGAGGTTACCAACCCACCATAGCTACCCTAGGGGCAGATCAATTTGATGAGGAGCACCCTAAGGAAAGACACTCAAAAGTGTCCTTCTTTAGTTACTTCTACTTGGCCTTGAACTTGGGCTCTCTTTTCTCAAACACTATATTGGGCTATTTTGAGGATGAGGGCATGTGGGCCCTTGGATTTTGGGCCTCAACTGGTTCTGCAATTGTGGCGTTGGTTTTGTTCCTTATTGGTACCCCCAGGTATAGGCACTTTATACCTAGAGGCAATCCACTGTCTAGATTTTGCCAAGTGGTGGTTGCTGCAGCTAGGAAATGGACTGCCGAGATCCCACCACGTGGAGGGGAATTATATGAGTTGGATGGGCAAGAAGTTTCAAGCAATGGGGGAAGGAAAATACTTCATACAAATGGATTCAAATTCTTGGATAGGGCAGCAGTAATCACCTCAAAGGAGACCACACCAAAGGAAAATGAAGTATATGACCCATGGCACCTATGCACTGTGACACAAGTGGAAGAAGTAAAATGCATACTAAGACTTCTCCCCATTTGGCTATGTACAATCTTATATTCCGTGGTTTTTACCCAAATGGCCTCTCTCTTTGTCGAACAAGGCGCTGCCATGAAAACCACTATTTCGACCTTCCACATTCCCCCGGCGAGTATGTCGAGTTTCGACATTCTTAGTGTCGCTGCTTTTATTTTCATTTATCGGCGAGTTTTAGACCCCATTGTAGCAAAGCTGAAGAAAAATTCGGGTTCTAAAGGGTTTACAGAACTTCAGAGGATGGGAATTGGGCTCATTATAGCCATATTGGCAATGGTTGTAGCCGGTATTGTGGAACATTTCAGGTTAAAGTACTCACAGGAAGGATGCCCAATCTGCACAAACTCAAGCACATTAAGCATATTATGGCAAATCCCACAATACGTACTAATAGGAGCATCAGAGGTATTTATGTATGTGGGTCAATTAGAGTTCTTCAACAAGGAAGCACCAGAAGGATTAAAGAGCTTTGGTAGTGCACTATGTATGACTTCAATTTCACTTGGCAATTATGTTAGTAGTCTACTTGTCACTATTGTGATGAGAATCTCCACAAAAAGTGACCAAATGCCAGGCTGGATACCTGGGAATCTTAACAAGGGCCATTTGGACATGTTTTATTTCCTCTTGGCCTTTTTGACCACAGCTGATTTTGTGGTGTACATTTTGTGTGCCAAGTGGTACGAAAATATTAGGTTTGGGGGAAAGGTTGGTGGTGAAGAAAGTAGGGGAAAAAATGAGGATGGTGACTTAAGAGTCTAG

Network for GWHGAAZE025119

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00854.22	PTR2	37	467	5.60E-93
PF00854.22	PTR2	628	1057	4.40E-95

Protein Sequence

>GWHPAAZE025137
MEQDNAEAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVLGLASLSLTSYIFLIKPNGCGSEKTPCGSHSILEIGMFYVSIYLIALGNGGYQPNIATLGADQFDEDHPKEGYSKLSFFSYFYLALNLGSLFSNTILGYFEDKGMWALGFWASTGSGIVALVLFLIGTPRYRHFTPRGNPLSRFGHVVVAAARKWTVKIPPRGEELYEVDGDESNGGRKILHTRGFKFLDRAAVITSKETYTSKKNEVNDDPWHLCTVTQVEEVKCILRLLPIWLCTILYSVLFTQMASLFVEQGAAMKTTISTFHIPPAGMSIFDILSVAAFIFIYRRVLDPLVAKLKKYPNGLTELRRMGIGLIIAIVAIVIAGIVEHFRLKYAKKDCPTCTNSSTLSILWQIPQYVLIGASEVFMYVGQLEFFNKEAPEGLKSFGSALCMTSISLGNYVSSLLVTIVMRISTKSDKIPGWIPSNLNKGHLDRFYFLLALFTTADFVVYILCAKWYQNIRFVGKVAALDGITKSRKVREEIGGSRWRRGVKRKSVDRNGKPAVRGRSGKWTAGILLLVNQGLATLAFFGVGVNLVLFLTRVIGQDNAEAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAVFQVIFVLGLVSLSLTSYIFLIKPTGCGSEKTPCGSHSSFEIAMFYTSIYLIALGNGGYQPTIATLGADQFDEEHPKERHSKVSFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASTGSAIVALVLFLIGTPRYRHFIPRGNPLSRFCQVVVAAARKWTAEIPPRGGELYELDGQEVSSNGGRKILHTNGFKFLDRAAVITSKETTPKENEVYDPWHLCTVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTTISTFHIPPASMSSFDILSVAAFIFIYRRVLDPIVAKLKKNSGSKGFTELQRMGIGLIIAILAMVVAGIVEHFRLKYSQEGCPICTNSSTLSILWQIPQYVLIGASEVFMYVGQLEFFNKEAPEGLKSFGSALCMTSISLGNYVSSLLVTIVMRISTKSDQMPGWIPGNLNKGHLDMFYFLLAFLTTADFVVYILCAKWYENIRFGGKVGGEESRGKNEDGDLRV

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0016020	cellular_component	membrane
GO:0022857	molecular_function	transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.985
	SRR3591706	second leaf	5.500
	SRR3591707	mature leaf	0.934
	SRR3591708	Shoot apex	2.244
	SRR3591709	Stem	1.788
	SRR3591710	White floral bud	0.909
	SRR3591711	White flower	9.266
	SRR3591712	Green floral bud	0.755
	SRR3591713	Yellow flower	12.312
SRP173429	SRR8316895	Juvenile bud stage	1.449
	SRR8316896	Juvenile bud stage	1.360
	SRR8316897	Juvenile bud stage	0.721
	SRR8316894	Third green stage	0.837
	SRR8316900	Third green stage	1.761
	SRR8316901	Third green stage	3.194
	SRR8316898	Complete white stage	1.063
	SRR8316899	Complete white stage	1.918
	SRR8316903	Complete white stage	1.423
	SRR8316902	Silver flowering stage	19.972
	SRR8316904	Silver flowering stage	7.824
	SRR8316905	Silver flowering stage	1.194
	SRR8316906	Gold flowering stage	4.251
	SRR8316907	Gold flowering stage	7.891
	SRR8316908	Gold flowering stage	1.212
SRP132670	SRR6706286	Control	3.248
	SRR6706287	Light intensity 50%	4.577
	SRR6706288	Light intensity 20%	4.532
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.033
	CNS0095593	Slightly white alabastrum(diploid) 2	1.930
	CNS0095594	Slightly white alabastrum(diploid) 3	1.792
	CNS0095595	Whole white alabastrum(diploid) 2	1.249
	CNS0095596	Whole white alabastrum(diploid) 3	0.569
	CNS0095597	Whole white alabastrum(diploid) 4	1.160
	CNS0095598	Silvery flower (diploied) 1	0.516
	CNS0095599	Silvery flower (diploied) 2	1.104
	CNS0095600	Silvery flower (diploied) 3	2.315
	CNS0095601	Golden flower (diploid) 1	1.547
	CNS0095602	Golden flower (diploid) 2	16.006
	CNS0095603	Golden flower (diploid) 3	15.875
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.983
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.661
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.650
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.833
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.613
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.457
	CNS0095610	Silvery flower (tetraploid) 1	1.720
	CNS0095611	Silvery flower (tetraploid) 2	1.141
	CNS0095612	Silvery flower (tetraploid) 3	3.766
	CNS0095613	Golden flower (tetraploid) 1	0.863
	CNS0095614	Golden flower (tetraploid) 2	1.290
	CNS0095615	Golden flower (tetraploid) 3	26.726
CRA001975	CRR073297	Stem 1	0.665
	CRR073298	Stem 2	0.394
	CRR073299	Stem 3	0.369
	CRR073300	Leaf 1	1.861
	CRR073301	Leaf 2	1.557
	CRR073302	Leaf 3	1.174
	CRR073303	Juvenile bud 1	0.926
	CRR073304	Juvenile bud 2	2.077
	CRR073305	Juvenile bud 3	3.780
	CRR073306	Third green 1	18.923
	CRR073307	Third green 2	35.228
	CRR073308	Third green 3	25.557
	CRR073309	Second white 1	6.879
	CRR073310	Second white 2	7.328
	CRR073311	Second white 3	14.745
	CRR073312	Silver flowering 1	71.711
	CRR073313	Silver flowering 2	80.614
	CRR073314	Silver flowering 3	98.025
	CRR073315	Gold flowering 1	5.083
	CRR073316	Gold flowering 2	10.324
	CRR073317	Gold flowering 3	3.120
	CRR073318	Tawny withering 1	10.953
	CRR073319	Tawny withering 2	19.174
	CRR073320	Tawny withering 3	12.569