Detail information of GWHGAAZE025120


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP09344.10unnamed protein product [Coffea canephora]
COGYP_284821.13E-13protein kinase:GAF
Swissprottr|Q944A7|Y4523_ARATH0Probable serine/threonine-protein kinase At4g35230
trEMBLtr|A0A068UM76|A0A068UM76_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_38 {ECO:0000313|EMBL:CDP09344.1}
TAIR10AT5G46570.10BR-signaling kinase 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene5563334055649276-
GWHAAZE00000007mRNA5563334055649276-
GWHAAZE00000007exon5564904355649276-
GWHAAZE00000007exon5564830255648437-
GWHAAZE00000007exon5564713255647265-
GWHAAZE00000007exon5564334455643449-
GWHAAZE00000007exon5564150655641591-
GWHAAZE00000007exon5564082355641008-
GWHAAZE00000007exon5563528455635442-
GWHAAZE00000007exon5563443755634475-
GWHAAZE00000007exon5563334055633591-
GWHAAZE00000007CDS5564904355649276-
GWHAAZE00000007CDS5564830255648437-
GWHAAZE00000007CDS5564713255647265-
GWHAAZE00000007CDS5564334455643449-
GWHAAZE00000007CDS5564150655641591-
GWHAAZE00000007CDS5564082355641008-
GWHAAZE00000007CDS5563528455635442-
GWHAAZE00000007CDS5563443755634475-
GWHAAZE00000007CDS5563334055633591-
Transcript Sequence

Network for GWHGAAZE025120

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07714.18PK_Tyr_Ser-Thr492841.10E-27
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_RLCK-XII-1

KEGG pathway

KO Enzyme pathway mapID
K14500BSK Plant hormone signal transduction map04075

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf28.205
SRR3591706second leaf15.864
SRR3591707mature leaf10.344
SRR3591708Shoot apex23.729
SRR3591709Stem20.713
SRR3591710White floral bud14.302
SRR3591711White flower15.956
SRR3591712Green floral bud28.918
SRR3591713Yellow flower13.673
SRP173429 SRR8316895Juvenile bud stage 24.143
SRR8316896Juvenile bud stage 28.296
SRR8316897Juvenile bud stage 18.212
SRR8316894Third green stage 13.479
SRR8316900Third green stage 35.273
SRR8316901Third green stage 31.371
SRR8316898Complete white stage 9.269
SRR8316899Complete white stage 44.133
SRR8316903Complete white stage 11.633
SRR8316902Silver flowering stage3.759
SRR8316904Silver flowering stage4.541
SRR8316905Silver flowering stage2.259
SRR8316906Gold flowering stage 6.798
SRR8316907Gold flowering stage 7.249
SRR8316908Gold flowering stage 9.393
SRP132670SRR6706286Control29.810
SRR6706287Light intensity 50%33.301
SRR6706288Light intensity 20%35.621
CNP0000432CNS0095592Slightly white alabastrum(diploid) 123.233
CNS0095593Slightly white alabastrum(diploid) 221.861
CNS0095594Slightly white alabastrum(diploid) 320.404
CNS0095595Whole white alabastrum(diploid) 217.332
CNS0095596Whole white alabastrum(diploid) 315.925
CNS0095597Whole white alabastrum(diploid) 414.802
CNS0095598Silvery flower (diploied) 120.254
CNS0095599Silvery flower (diploied) 214.834
CNS0095600Silvery flower (diploied) 317.555
CNS0095601Golden flower (diploid) 112.020
CNS0095602Golden flower (diploid) 217.112
CNS0095603Golden flower (diploid) 315.920
CNS0095604Slightly white alabastrum(tetraploid) 121.769
CNS0095605Slightly white alabastrum(tetraploid) 217.238
CNS0095606Slightly white alabastrum(tetraploid) 341.718
CNS0095607Whole white alabastrum(tetraploid) 111.252
CNS0095608Whole white alabastrum(tetraploid) 211.387
CNS0095609Whole white alabastrum(tetraploid) 327.353
CNS0095610Silvery flower (tetraploid) 111.059
CNS0095611Silvery flower (tetraploid) 211.243
CNS0095612Silvery flower (tetraploid) 36.096
CNS0095613Golden flower (tetraploid) 14.293
CNS0095614Golden flower (tetraploid) 28.472
CNS0095615Golden flower (tetraploid) 34.583
CRA001975CRR073297Stem 144.983
CRR073298Stem 241.041
CRR073299Stem 349.397
CRR073300Leaf 145.241
CRR073301Leaf 244.565
CRR073302Leaf 345.654
CRR073303Juvenile bud 146.114
CRR073304Juvenile bud 231.580
CRR073305Juvenile bud 338.995
CRR073306Third green 13.451
CRR073307Third green 23.250
CRR073308Third green 34.441
CRR073309Second white 14.258
CRR073310Second white 22.642
CRR073311Second white 31.870
CRR073312Silver flowering 12.220
CRR073313Silver flowering 23.153
CRR073314Silver flowering 32.088
CRR073315Gold flowering 120.739
CRR073316Gold flowering 228.085
CRR073317Gold flowering 316.079
CRR073318Tawny withering 146.450
CRR073319Tawny withering 241.596
CRR073320Tawny withering 342.136