Gene detail

Detail information of GWHGAAZE025127

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011086411.1	0	PREDICTED: non-specific phospholipase C4-like [Sesamum indicum]
COG	YP_003881454.1	5E-45	phospholipase C 4
Swissprot	tr\|Q9SRQ7\|NPC4_ARATH	2E-180	Non-specific phospholipase C4
trEMBL	tr\|A0A068VGT0\|A0A068VGT0_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_662 {ECO:0000313\|EMBL:CDP19759.1}
TAIR10	AT3G03530.1	3E-147	non-specific phospholipase C4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	55748367	55755202	+
GWHAAZE00000007	mRNA	55748367	55755202	+
GWHAAZE00000007	exon	55748367	55748541	+
GWHAAZE00000007	exon	55749192	55749351	+
GWHAAZE00000007	exon	55752257	55752666	+
GWHAAZE00000007	exon	55754199	55754372	+
GWHAAZE00000007	exon	55754877	55755202	+
GWHAAZE00000007	CDS	55748367	55748541	+
GWHAAZE00000007	CDS	55749192	55749351	+
GWHAAZE00000007	CDS	55752257	55752666	+
GWHAAZE00000007	CDS	55754199	55754372	+
GWHAAZE00000007	CDS	55754877	55755202	+

Transcript Sequence
>GWHTAAZE025161 ATGCTTGGCTGGATGAGATCCCTCAACCCCCATATCGACGGTGTCACCGGAGCCGAATCTAACCCTCTCTCCACCACCAACCCCGCCTCGGACCACCTCTTCTTTGGTGACCGAGCCATTTACGTTGAACCCGACCCTGGCCACTCCATTCAAGATACATACGAGCAAGTGTTCGGTTTTGCACAAAATGCGGAGAGAAAAGAGAAGGGAATGGCAGAGACAGTGATGAACGGATATAAACCGGAGGCGGTGCCAGTTTTCAAGGAGTTGGTGTCAGAGTTCGCGGTGTGTGACCGGTGGTTCGCGGCGGTGCCAGCATCCACACAGCCCAATAGGAACCTCAGAAAATTGAAATACATAAAGAACTTTCACCAATATGACCTCGAGTTTAAAACGCATTGTAAGGAGGGAAAGCTACCAAACTACGTCGTAATAGAACAAAGGTATTTTGATTTGACGATATTGCCAGGTAATGATGATCACCCTTCACACGATGTCTTTGAAGGCCAAAAATTAGTGAAGGAAGTTTATGAAGCTTTGAGGGCAAGTCCTCAGTGGAATGAAATTTTGTTTATAATAACATATGACGAACATGGTGGATTTTATGATCACGTGCCAACTCCGGTGACCGCGGTTCCTAGTCCTGATGGAATCATGGGGCCGGAGCCTTATAACTTTCAGTTTGATCGGTTGGGCGTTAGGGTTCCTGCCATCTTCATTTCTCCATGGATTGAGCGCAAAACAGTGTTGCATGGGGCTTCAGGGCCATACCCTACATCAGAATATGAACATTCATCAATACCAGCAACAGTCAAGAAGATCTTTAATTTGCCACACTTTCTAACCAAACGTGACGCTTGGGCTGCCACTTTTGAGGGTATTATTGTCATCAGAAAGACCCCTAGAACCGATTGTCCAGTGACCTTGCCGGAGCCTGTGAAACTCCGAGAGGCGGAAGCAAAAGAAAATGCGAAATTGAGCGAGTTCCAAGAGGAGTTAGTACAAATGGCAGCAACACTATGTGGGGATTATAAGAAGGAAGATGTGGATAAATTGACAGTTGAGGAGGCAGTTGATTATGTTAAAGATGCATTCAAAAGATTCTTAGATGAATGTGAGAGAGCTAAAGAAAGTGGTGCTGATGAATCCACTATTTGTGGGCCATTAATTGATCTTCCACCTACAAGACCCAACAAAAGATCCACGGCTTCCAAGTTCGTTTCCTGTTTAGTTTGTGGGCATTAA

Network for GWHGAAZE025127

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04185.15	Phosphoesterase	2	112	5.90E-19
PF04185.15	Phosphoesterase	113	278	6.50E-51

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01114	plc	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Inositol phosphate metabolism	map00562
		Glycerophospholipid metabolism	map00564
		Ether lipid metabolism	map00565
		Quorum sensing	map02024
		Thyroid hormone signaling pathway	map04919

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity
GO:0016788	molecular_function	hydrolase activity, acting on ester bonds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	7.393
	SRR3591710	White floral bud	3.941
	SRR3591711	White flower	1.844
	SRR3591712	Green floral bud	7.000
	SRR3591713	Yellow flower	2.022
SRP173429	SRR8316895	Juvenile bud stage	0.414
	SRR8316896	Juvenile bud stage	1.103
	SRR8316897	Juvenile bud stage	0.563
	SRR8316894	Third green stage	0.533
	SRR8316900	Third green stage	3.474
	SRR8316901	Third green stage	4.765
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.361
	SRR8316903	Complete white stage	0.150
	SRR8316902	Silver flowering stage	0.188
	SRR8316904	Silver flowering stage	1.062
	SRR8316905	Silver flowering stage	0.100
	SRR8316906	Gold flowering stage	0.405
	SRR8316907	Gold flowering stage	0.244
	SRR8316908	Gold flowering stage	0.258
SRP132670	SRR6706286	Control	8.752
	SRR6706287	Light intensity 50%	7.789
	SRR6706288	Light intensity 20%	7.742
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.041
	CNS0095593	Slightly white alabastrum(diploid) 2	0.218
	CNS0095594	Slightly white alabastrum(diploid) 3	0.664
	CNS0095595	Whole white alabastrum(diploid) 2	0.206
	CNS0095596	Whole white alabastrum(diploid) 3	0.252
	CNS0095597	Whole white alabastrum(diploid) 4	0.475
	CNS0095598	Silvery flower (diploied) 1	0.034
	CNS0095599	Silvery flower (diploied) 2	0.125
	CNS0095600	Silvery flower (diploied) 3	0.279
	CNS0095601	Golden flower (diploid) 1	0.278
	CNS0095602	Golden flower (diploid) 2	0.436
	CNS0095603	Golden flower (diploid) 3	0.985
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.403
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.717
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.106
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.310
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.857
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.564
	CNS0095610	Silvery flower (tetraploid) 1	2.659
	CNS0095611	Silvery flower (tetraploid) 2	1.225
	CNS0095612	Silvery flower (tetraploid) 3	2.624
	CNS0095613	Golden flower (tetraploid) 1	2.762
	CNS0095614	Golden flower (tetraploid) 2	7.040
	CNS0095615	Golden flower (tetraploid) 3	6.626
CRA001975	CRR073297	Stem 1	0.400
	CRR073298	Stem 2	0.378
	CRR073299	Stem 3	0.365
	CRR073300	Leaf 1	0.512
	CRR073301	Leaf 2	0.651
	CRR073302	Leaf 3	1.280
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	1.089
	CRR073305	Juvenile bud 3	0.120
	CRR073306	Third green 1	0.123
	CRR073307	Third green 2	0.966
	CRR073308	Third green 3	1.728
	CRR073309	Second white 1	0.087
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.109
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.039
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.109
	CRR073317	Gold flowering 3	0.881
	CRR073318	Tawny withering 1	0.823
	CRR073319	Tawny withering 2	1.022
	CRR073320	Tawny withering 3	0.707