Gene detail

Detail information of GWHGAAZE025172

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010244229.1	9.1328E-130	PREDICTED: aspartic proteinase CDR1-like [Nelumbo nucifera]
Swissprot	tr\|Q6XBF8\|CDR1_ARATH	2E-118	Aspartic proteinase CDR1 (Precursor)
trEMBL	tr\|M5X2T9\|M5X2T9_PRUPE	2E-129	Uncharacterized protein {ECO:0000313\|EMBL:EMJ20387.1} (Fragment)
TAIR10	AT1G64830.1	7E-95	Eukaryotic aspartyl protease family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	56579324	56580595	+
GWHAAZE00000007	mRNA	56579324	56580595	+
GWHAAZE00000007	exon	56579324	56580595	+
GWHAAZE00000007	CDS	56579324	56580595	+

Transcript Sequence
>GWHTAAZE025206 ATGTTCAACATTTTTCTTTCCACATTTTCTCTTGTAGAAGCAAATGTTAATGGCTATTTTAGCGTTGATCTCATCCATCGAGATTCAACAAAATCTCCATTCTACGATACTTCCGTAACTTCTCATAAACTTTTGAGCAATGCTATCCAACGTTCAATTAGCCGTGTCAACCATCTTGCAATAAGTTCATCCTCCTCAACCAATAAATTATTACTCTCCAGTCTTGGAGACTATATCCTCAACATATCAATTGGCTCACCGCCCGTTACTTATGTAGGTATTGTCGATACAGGCAGTGACCTTACATGGATCCAATGCGAGCCTTGTCCCAAGTGTCACATACAAAAGACGCCTCTTTTTAGTCCTAAAAGTTCTTCAACTTATAAAGAGGTTCCTTGTCATTCAAGGCCATGCAGATCACTTGAAGAAACCTCTTGCTTGACCGCTAATGGAAGTTGCCAATACACTGCGACTTACATAGATGAATCCTTCACAAATGGAGTTCTGGCCACTGAAACACTCACCCTACAATCAACTACAGCAGGACCAGTATCGCTCCCGAAGATTCTTTTCGGTTGTGGACATAACAATAGTGTCGCAATAATGAAAGGGGATGAAAGTGGTATAATTGGCTTTGGACGGGGAAAGTTTTCCCTTATTTCTCAAATGAAATATTTGGCTCATGGTAAATTTTCGTACTGTTTGCCTCCCGTATCATCCCAATGGACAAAGTCTACCAAAATGAATTTTGGTGACAATGGAGTTGTTTTGGGTCCTGGAGTGGTCTCTGTGCCACTATATACCGGGTTAGTATACCATGAAAGTAACTATTACGTAACTTTAGAAGCTATTTCTGTTGGAGACAAGAAGTTGGAATATCCTAGTCCAATCATAGAGGGTAACATGATTATAGACTCTGGTACAATATTGTCGTACTTTGGTACATATTTTCTCATGGACATAGATAGGGAAGTTAAAAAGGCGATAAATGCAAAACCTGTGGAGGACCCTTTGAAGATCCTAAACGTGTGTTATAGGACACAGGATAATATAACTATTCCTACTATTACAGTGCATTTTCGTGGAGCAGATGTGAAGCTGAATGCAGAAAACACGTTTGTCAAAACAAGTAAAGATGTTATGTGCCTTGCTTTTGGTCGAGAGGATAGGATTTCAATTTTTGGAAACTTGGCTCAAATAAACTTCATGGTAGGTTATAACCTCGAGAAGAACACAATATCGTTCAAGCCCACCGATTGCACTAAAGAGTGA

Network for GWHGAAZE025172

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0022

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14543.7	TAXi_N	78	252	1.90E-52
PF14541.7	TAXi_C	276	416	3.60E-23

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0004190	molecular_function	aspartic-type endopeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.384
	SRR3591706	second leaf	0.132
	SRR3591707	mature leaf	0.127
	SRR3591708	Shoot apex	0.783
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.205
	SRR3591711	White flower	0.561
	SRR3591712	Green floral bud	1.290
	SRR3591713	Yellow flower	0.143
SRP173429	SRR8316895	Juvenile bud stage	0.048
	SRR8316896	Juvenile bud stage	0.037
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.107
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.290
	SRR8316903	Complete white stage	0.235
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.058
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.168
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.047
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.043
	CNS0095601	Golden flower (diploid) 1	0.338
	CNS0095602	Golden flower (diploid) 2	0.093
	CNS0095603	Golden flower (diploid) 3	0.319
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.887
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.772
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.003
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.242
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.352
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.269
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.309
	CNS0095612	Silvery flower (tetraploid) 3	0.167
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.155
	CNS0095615	Golden flower (tetraploid) 3	0.055
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000