Gene detail

Detail information of GWHGAAZE025179

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009354690.1	3.7277E-143	PREDICTED: 60S ribosomal protein L6-1-like [Pyrus x bretschneideri]
Swissprot	tr\|P34091\|RL6_MESCR	3E-132	60S ribosomal protein L6
trEMBL	tr\|B9RHH3\|B9RHH3_RICCO	1E-137	60S ribosomal protein L6 {ECO:0000256\|RuleBase:RU000662}
TAIR10	AT1G74050.1	3E-86	Ribosomal protein L6 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	56750549	56753047	+
GWHAAZE00000007	mRNA	56750549	56753047	+
GWHAAZE00000007	exon	56750549	56750805	+
GWHAAZE00000007	exon	56751134	56751240	+
GWHAAZE00000007	exon	56752075	56752256	+
GWHAAZE00000007	exon	56752573	56753047	+
GWHAAZE00000007	CDS	56750549	56750805	+
GWHAAZE00000007	CDS	56751134	56751240	+
GWHAAZE00000007	CDS	56752075	56752256	+
GWHAAZE00000007	CDS	56752573	56752728	+
GWHAAZE00000007	three_prime_UTR	56752729	56753047	+

Transcript Sequence
>GWHTAAZE025213 ATGGCGCCAAAACAGAAAACCCCAAAGGTGACCAGAAACCCAGATCTCGTAAGAGGAGTGGGCAAGTACTCTCGCTCAAAGATGTACCATAAGAGGGGTCTTTGGGCTATCAAGGCTAAAAACGGCGGCGTTTTTCCAAAACACGACAAGAAGCCGGCCGATGCCGCTCCGGCAGAGAAGCCACCAAAGTTTTATCCGGCCGATGATGTCAAGAAACCACTTGTGAACAAGCGTATACCCAAACCCACTAAGCTCAGGGCTAATATTACTCCTGGAACAGTGCTGATAATATTGGCTGGTAGGTTTAAGGGCAAGAGAGTTGTGTTCTTGAAGCAACTTACTTCTGGGTTGCTTCTCGTTACTGGGCCGTTCAAGATTAATGGTGTTCCACTGAGACGGGTGAATCAGTCATACGTGATTGCCACTTCGACCAAGGTTGATTTGTCAGGGTTAAATGTGGACAAGTTTGTTGACAAATACTTTGCAAAGCAAGTTGAGAAAAAGAAGAAGAAAGGAGAAGGCGAGTTCTTTGAGGCAGAGAAAGAGGAGAAGAATGTGCTACCAACGGAGAAGAAAGACGACCAGAAAACTGTTGATGCATGTTTGTTAAAATCCATTGAGGCAGTGCCGGACCTCAAGACCTATTTGGCAGCAAGGTTTTCGCTCAAGGCAGGCATGAAACCTCACGAGCTTGTCTTTTAGACGACAAAAACATTTTGAATATTTTTATAACCGATTTTGTTTTGTACTTTTTGGGTTTTATTTCGGTTGGACCTTCGGGCACCTAAATTTTATGACAATGTCAATGGGAATTTTCTATTCTATGATCTGTTTGATGAGTACAATGAATTATTATATGCTGAGAAATTCTCAATGTAAGAGATGTACTTTTATCATGGGAAAAATTTAGGTGCCAAATATTTTGTTTTATTGGTACATTTCTCAAGAGTTTTTGTTTCTCTGACATGGAATTATTTGTTCTTTCATGAGAAATTTGGAAGAGTTGTAGTTTTGGCAAATA

Network for GWHGAAZE025179

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03868.16	Ribosomal_L6e_N	3	61	5.10E-17
PF01159.20	Ribosomal_L6e	126	233	6.00E-39

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02934	RP-L6e, RPL6	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	233.136
	SRR3591706	second leaf	143.879
	SRR3591707	mature leaf	57.301
	SRR3591708	Shoot apex	315.563
	SRR3591709	Stem	117.198
	SRR3591710	White floral bud	104.671
	SRR3591711	White flower	141.977
	SRR3591712	Green floral bud	220.400
	SRR3591713	Yellow flower	89.392
SRP173429	SRR8316895	Juvenile bud stage	151.373
	SRR8316896	Juvenile bud stage	199.163
	SRR8316897	Juvenile bud stage	101.272
	SRR8316894	Third green stage	85.862
	SRR8316900	Third green stage	318.759
	SRR8316901	Third green stage	287.354
	SRR8316898	Complete white stage	64.301
	SRR8316899	Complete white stage	251.439
	SRR8316903	Complete white stage	90.560
	SRR8316902	Silver flowering stage	62.059
	SRR8316904	Silver flowering stage	64.341
	SRR8316905	Silver flowering stage	30.564
	SRR8316906	Gold flowering stage	80.200
	SRR8316907	Gold flowering stage	86.115
	SRR8316908	Gold flowering stage	94.368
SRP132670	SRR6706286	Control	273.533
	SRR6706287	Light intensity 50%	286.675
	SRR6706288	Light intensity 20%	311.539
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	265.368
	CNS0095593	Slightly white alabastrum(diploid) 2	303.035
	CNS0095594	Slightly white alabastrum(diploid) 3	254.835
	CNS0095595	Whole white alabastrum(diploid) 2	245.031
	CNS0095596	Whole white alabastrum(diploid) 3	273.228
	CNS0095597	Whole white alabastrum(diploid) 4	191.380
	CNS0095598	Silvery flower (diploied) 1	117.785
	CNS0095599	Silvery flower (diploied) 2	112.484
	CNS0095600	Silvery flower (diploied) 3	98.356
	CNS0095601	Golden flower (diploid) 1	93.503
	CNS0095602	Golden flower (diploid) 2	80.853
	CNS0095603	Golden flower (diploid) 3	78.950
	CNS0095604	Slightly white alabastrum(tetraploid) 1	210.565
	CNS0095605	Slightly white alabastrum(tetraploid) 2	197.248
	CNS0095606	Slightly white alabastrum(tetraploid) 3	305.055
	CNS0095607	Whole white alabastrum(tetraploid) 1	93.808
	CNS0095608	Whole white alabastrum(tetraploid) 2	88.139
	CNS0095609	Whole white alabastrum(tetraploid) 3	218.132
	CNS0095610	Silvery flower (tetraploid) 1	84.785
	CNS0095611	Silvery flower (tetraploid) 2	65.685
	CNS0095612	Silvery flower (tetraploid) 3	42.404
	CNS0095613	Golden flower (tetraploid) 1	40.400
	CNS0095614	Golden flower (tetraploid) 2	68.306
	CNS0095615	Golden flower (tetraploid) 3	29.859
CRA001975	CRR073297	Stem 1	142.894
	CRR073298	Stem 2	145.724
	CRR073299	Stem 3	148.265
	CRR073300	Leaf 1	151.716
	CRR073301	Leaf 2	161.177
	CRR073302	Leaf 3	174.398
	CRR073303	Juvenile bud 1	173.110
	CRR073304	Juvenile bud 2	120.453
	CRR073305	Juvenile bud 3	146.978
	CRR073306	Third green 1	26.502
	CRR073307	Third green 2	24.283
	CRR073308	Third green 3	30.579
	CRR073309	Second white 1	21.504
	CRR073310	Second white 2	17.372
	CRR073311	Second white 3	10.590
	CRR073312	Silver flowering 1	21.789
	CRR073313	Silver flowering 2	22.199
	CRR073314	Silver flowering 3	19.145
	CRR073315	Gold flowering 1	48.097
	CRR073316	Gold flowering 2	51.447
	CRR073317	Gold flowering 3	45.542
	CRR073318	Tawny withering 1	119.890
	CRR073319	Tawny withering 2	106.152
	CRR073320	Tawny withering 3	145.386