Gene detail

Detail information of GWHGAAZE025196

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007218815.1	9.1326E-118	hypothetical protein PRUPE_ppa010026mg [Prunus persica]
COG	YP_003817066.1	2E-24	ATP synthase F1 subunit delta
Swissprot	tr\|P22778\|ATPO_IPOBA	2E-111	ATP synthase subunit O, mitochondrial (Precursor)
trEMBL	tr\|M5X276\|M5X276_PRUPE	3E-118	Uncharacterized protein {ECO:0000313\|EMBL:EMJ20014.1}
TAIR10	AT5G13450.1	3E-69	delta subunit of Mt ATP synthase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	57039329	57043888	+
GWHAAZE00000007	mRNA	57039329	57043888	+
GWHAAZE00000007	exon	57039329	57039560	+
GWHAAZE00000007	exon	57040389	57040475	+
GWHAAZE00000007	exon	57042306	57042549	+
GWHAAZE00000007	exon	57042976	57043088	+
GWHAAZE00000007	exon	57043374	57043460	+
GWHAAZE00000007	exon	57043766	57043888	+
GWHAAZE00000007	five_prime_UTR	57039329	57039428	+
GWHAAZE00000007	CDS	57039429	57039560	+
GWHAAZE00000007	CDS	57040389	57040475	+
GWHAAZE00000007	CDS	57042306	57042549	+
GWHAAZE00000007	CDS	57042976	57043088	+
GWHAAZE00000007	CDS	57043374	57043460	+
GWHAAZE00000007	CDS	57043766	57043888	+

Transcript Sequence
>GWHTAAZE025230 GTACAAGAACAGCAACAGCACAAAGGTCGTTAAGCTCTTCGCTTTGAAGAAATCAGAAAACGAAAAGTGAAGAAGAAAAACCTAATCTTCAGAATTAGCAATGGCAGCAGGGCGTTTCAGATCAACCATCCCCCTCCTCACTAAGCAACTTCTAAAATTCGATTCCCTCTCGACGCAGAGTTCCACTGCTGAACGAACCCTAATATCAACACCTACTTTCATCAAATCCCAGTCTCTCGGACTTCATTCCATTTTCTGTCATTCTGCGATGCAGCTCTCGAGAAATTATGCGACTGCGCCAAAGGAACAGAAAGTCAAGTTACCTGTGGCATTGTATGGGGTTTCTGGAAATTATGCCTCTGCTTTATACATCGCAGCAACAAAAACTAATGCATTGGACAAGGTTGAGACCGAACTTTTGGACCTCGTTGAGGCTTCAAAGAAAACCCCTACATTTTCCCTGTTCATGAAGGATTTGTCTGTACCTGCGGATACTAGAGTGAAGGCCATAAATGAAATTTGTGATCATGCTAAATTTGCAGATATCACAAAGAACTTCTTGGTTGTTTTGGCCGAGAATGGGAGGCTAAGACACTTAGAAAGTATTGCGAAGAGATTCACTGAGTTGACCATGGCGCACAAGGGAGAAGTTAAAGCCATCGTGACGAGTGTCATTCCTCTTCCTACAGAAGAGGAGAAAGAACTGAAGCAAACATTGCAGGATATTCTTGGAAAAGGGAAGAAGGTTAAACTAGAACAGAAGATCGATCCGAGTATTCTTGGTGGGCTCATGGTGGAATTCGGGCAAAAGGTTTTTGACATGTCCATAAGAACTAGGGCACGCCAGATGGAGAGGTTCCTCAGGGATCCTGTCAACAGCCTCTAA

Network for GWHGAAZE025196

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00213.19	OSCP	81	252	2.10E-45

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02137	ATPeF0O, ATP5O, ATP5	Metabolic pathways	map01100
		Oxidative phosphorylation	map00190
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0015986	biological_process	ATP synthesis coupled proton transport
GO:0016020	cellular_component	membrane
GO:0046933	molecular_function	proton-transporting ATP synthase activity, rotational mechanism

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	68.249
	SRR3591706	second leaf	39.360
	SRR3591707	mature leaf	33.066
	SRR3591708	Shoot apex	59.259
	SRR3591709	Stem	55.658
	SRR3591710	White floral bud	58.623
	SRR3591711	White flower	87.099
	SRR3591712	Green floral bud	99.587
	SRR3591713	Yellow flower	101.020
SRP173429	SRR8316895	Juvenile bud stage	50.908
	SRR8316896	Juvenile bud stage	85.681
	SRR8316897	Juvenile bud stage	43.266
	SRR8316894	Third green stage	36.267
	SRR8316900	Third green stage	118.658
	SRR8316901	Third green stage	109.674
	SRR8316898	Complete white stage	39.532
	SRR8316899	Complete white stage	97.819
	SRR8316903	Complete white stage	57.796
	SRR8316902	Silver flowering stage	53.181
	SRR8316904	Silver flowering stage	66.392
	SRR8316905	Silver flowering stage	35.790
	SRR8316906	Gold flowering stage	126.944
	SRR8316907	Gold flowering stage	99.950
	SRR8316908	Gold flowering stage	123.512
SRP132670	SRR6706286	Control	91.419
	SRR6706287	Light intensity 50%	101.044
	SRR6706288	Light intensity 20%	110.058
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	62.339
	CNS0095593	Slightly white alabastrum(diploid) 2	51.534
	CNS0095594	Slightly white alabastrum(diploid) 3	62.741
	CNS0095595	Whole white alabastrum(diploid) 2	60.652
	CNS0095596	Whole white alabastrum(diploid) 3	66.819
	CNS0095597	Whole white alabastrum(diploid) 4	62.160
	CNS0095598	Silvery flower (diploied) 1	35.972
	CNS0095599	Silvery flower (diploied) 2	46.003
	CNS0095600	Silvery flower (diploied) 3	70.562
	CNS0095601	Golden flower (diploid) 1	46.130
	CNS0095602	Golden flower (diploid) 2	68.567
	CNS0095603	Golden flower (diploid) 3	63.514
	CNS0095604	Slightly white alabastrum(tetraploid) 1	83.737
	CNS0095605	Slightly white alabastrum(tetraploid) 2	83.430
	CNS0095606	Slightly white alabastrum(tetraploid) 3	62.670
	CNS0095607	Whole white alabastrum(tetraploid) 1	77.043
	CNS0095608	Whole white alabastrum(tetraploid) 2	79.119
	CNS0095609	Whole white alabastrum(tetraploid) 3	88.113
	CNS0095610	Silvery flower (tetraploid) 1	68.007
	CNS0095611	Silvery flower (tetraploid) 2	63.708
	CNS0095612	Silvery flower (tetraploid) 3	60.108
	CNS0095613	Golden flower (tetraploid) 1	52.821
	CNS0095614	Golden flower (tetraploid) 2	63.154
	CNS0095615	Golden flower (tetraploid) 3	79.702
CRA001975	CRR073297	Stem 1	55.729
	CRR073298	Stem 2	49.625
	CRR073299	Stem 3	59.883
	CRR073300	Leaf 1	65.557
	CRR073301	Leaf 2	56.560
	CRR073302	Leaf 3	67.891
	CRR073303	Juvenile bud 1	61.445
	CRR073304	Juvenile bud 2	71.309
	CRR073305	Juvenile bud 3	69.141
	CRR073306	Third green 1	48.663
	CRR073307	Third green 2	50.810
	CRR073308	Third green 3	45.747
	CRR073309	Second white 1	72.938
	CRR073310	Second white 2	63.442
	CRR073311	Second white 3	65.374
	CRR073312	Silver flowering 1	56.564
	CRR073313	Silver flowering 2	49.274
	CRR073314	Silver flowering 3	35.522
	CRR073315	Gold flowering 1	19.777
	CRR073316	Gold flowering 2	24.331
	CRR073317	Gold flowering 3	19.822
	CRR073318	Tawny withering 1	49.704
	CRR073319	Tawny withering 2	45.315
	CRR073320	Tawny withering 3	46.275