Gene detail

Detail information of GWHGAAZE025199

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008231249.1	0	PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming] [Prunus mume]
COG	YP_002489496.1	5E-19	cellulose synthase
Swissprot	tr\|Q941L0\|CESA3_ARATH	0	Cellulose synthase A catalytic subunit 3 [UDP-forming]
trEMBL	tr\|M5X614\|M5X614_PRUPE	0	Cellulose synthase {ECO:0000256\|RuleBase:RU361116}
TAIR10	AT5G05170.1	0	Cellulose synthase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	57108293	57118924	-
GWHAAZE00000007	mRNA	57108293	57118924	-
GWHAAZE00000007	exon	57108293	57108877	-
GWHAAZE00000007	exon	57109670	57110020	-
GWHAAZE00000007	exon	57111008	57111210	-
GWHAAZE00000007	exon	57112231	57112495	-
GWHAAZE00000007	exon	57112901	57113113	-
GWHAAZE00000007	exon	57113197	57113322	-
GWHAAZE00000007	exon	57113915	57114052	-
GWHAAZE00000007	exon	57114408	57114753	-
GWHAAZE00000007	exon	57115433	57115699	-
GWHAAZE00000007	exon	57116505	57116718	-
GWHAAZE00000007	exon	57117103	57117178	-
GWHAAZE00000007	exon	57117266	57117486	-
GWHAAZE00000007	exon	57118110	57118302	-
GWHAAZE00000007	exon	57118901	57118924	-
GWHAAZE00000007	CDS	57118901	57118924	-
GWHAAZE00000007	CDS	57118110	57118302	-
GWHAAZE00000007	CDS	57117266	57117486	-
GWHAAZE00000007	CDS	57117103	57117178	-
GWHAAZE00000007	CDS	57116505	57116718	-
GWHAAZE00000007	CDS	57115433	57115699	-
GWHAAZE00000007	CDS	57114408	57114753	-
GWHAAZE00000007	CDS	57113915	57114052	-
GWHAAZE00000007	CDS	57113197	57113322	-
GWHAAZE00000007	CDS	57112901	57113113	-
GWHAAZE00000007	CDS	57112231	57112495	-
GWHAAZE00000007	CDS	57111008	57111210	-
GWHAAZE00000007	CDS	57109670	57110020	-
GWHAAZE00000007	CDS	57108293	57108877	-

Transcript Sequence
>GWHTAAZE025233 ATGGAATCAGAAGGAGAAACTGGGGAGAAGTCCTTGAAGCTGGGTGGTCAGGTATGCCAGATCTGCGGTGATAATGTTGGCAAGAGTGTGGATGGTGAACCATTTGTAGCTTGCGATGTTTGTGCATTTCCCGTTTGCAGGCCATGCTACGAGTACGAGCAGAAGGATGGGAATCAGTCTTGCCCTCAATGCAAAACTAGATACAAGAAACATAAAGAAATCCCTGATGTTCGTGGAGACGAAGAGGAGGATGGCTATGCCAATGATGGTGCGAGGAATGTTCACTACTCTACACAAAATCAAAATGGGAAGCAAAAGGCTGCAGAGCGCATGCTTGGGTGGCAAATGACATATGGGCGAGGCGAAGATGTTGGGGCCCCAAACTATGATAAAGAGATCTCCCACACTCACATCCCGTTGCTCACTAATGGACAGGAGGTTTCTGGAGAGCTGTCAGCTGCATCACCAGAGCGACTTTCTATGGCGTCTCCTGGACCTGTTGGTGGTGGGAAAGGTAATGTTCTCTTTGCAGGAAATATTAGGGTTGTTGATCCCGTGAGAGAGTTTGGATCCCCTGGATTAGGCAATGTAGCCTGGAAAGAGAGAGTTGATGGCTGGAAAATGAAGCAGGAGAAGAATGTTGTTCCAATGACAACTAGCAATGCTGCTTCTGAAAGAGGTGGAGATATTGATGCGAGCACAGATGTGCTGGTCGATGACTCTCTGCTGAATGATGAAGCTCGGCAACCTCTTTCGAGGAAAGTTTCTATTCCCTCTTCCAAGATAAATCCTTACAGGATGGTTATCGTCCTGCGGCTCATTATTCTTTCTATATTCTTGCATTACCGGATAACAAATCCTGTGCTTAATGCCTATCCTTTGTGGTTATTATCTGTGATATGTGAGATTTGGTTTGCAATATCCTGGATATTGGATCAGTTCCCTAAATGGCTCCCCATAAACCGTGAAACATATCTTGACAGGCTTGCTCTTAGATACGATCGAGAAGGAGAGCCCTCACAATTGGCTGCTGTTGACATATTTGTCAGTACAGTCGACCCTTTAAAGGAGCCTCCTCTTGTTACTGCCAATACTGTACTTTCCATTCTTGCAGTTGACTACCCAGTTGACAAGGTTTCTTGTTATGTCTCTGATGATGGAGCTGCCATGTTGTCATTTGAAGCTCTCTCAGAAACATCGGAATTTGCAAGGAAGTGGGTCCCTTTCTGCAAGAAGTATAGCATTGAGCCCCGTGCTCCAGAATGGTACTTTGCTCAGAAGGTTGATTACCTCAAAGATAAAGTCCAGCCATCATTTGTCAAAGATCGTAGAGCTATGAAGAGAGAATATGAAGAGTTTAAAATTCGTGTAAATGGACTTGTTGCCAAGGCAACAAAAATTCCTGAAGAAGGATGGATCATGCAAGATGGTACACCATGGCCTGGTAATAACACCAGGGATCATCCTGGAATGATTCAGGTTTTCTTGGGTCAAAGTGGAGGGCTTGATACTGATGGGAATGAGCTGCCTCGATTAGTCTATGTTTCTCGTGAGAAGCGTCCAGGCTTCCAACACCACAAGAAAGCTGGTGCAATGAATGCACTTGTTCGCGTATCGGCAGTCCTTACTAATGGGCCCTTCTTGTTGAATCTTGATTGTGATCACTACATCAACAATAGCAAGGCCTTGAGAGAAGCAATGTGTTTTATGATGGATCCAAACCTTGGAAAATATGTATGTTATGTTCAGTTTCCACAGAGATTTGATGGTATTGATAGGAGTGATCGATATGCCAACCGAAACACTGTTTTCTTTGATATTAACTTGAGAGGTTTGGATGGCATTCAAGGACCCGTTTATGTCGGTACTGGGTGTGTCTTTAATAGAACAGCATTGTATGGTTATGAGCCTCCTCTCAAACCTAAGCAAAAGAAATCAGGATTTTTCTCTTCTTGCTGTGGTGGATCACGGAAGAAAAGCTCCAAATCAAGTAAAAATGGCTCAGATAAAAAGAAATCTGGCAAGCATGTTGACCCCACTGTGCCAATATTCAGCTTAGAGGATATAGAGGAGGGAGTTGAAGGTGCTGGATTTGATGATGAGAAGTCACTGCTGATGTCGCAAATGAGCCTCGAGAAAAGATTTGGTCAATCTGCTGTTTTTGTAGCATCCACACTGATGGAGAACGGTGGTGTTCCTCAGTCTGCAACCCCGGAGGCTCTTCTTAAAGAGGCTATTCATGTCATCAGTTGCGGATATGAGGATAAATCGGACTGGGGACAAGAGATAGGATGGATCTACGGTTCTGTCACAGAAGATATTCTTACAGGATTCAAAATGCATGCCCGAGGTTGGAGATCAATTTACTGCATGCCCAAAAGGCCAGCCTTTAAAGGTTCTGCTCCTATTAATCTTTCAGATCGTTTAAATCAAGTGCTTCGATGGGCTTTGGGATCTGTGGAAATTCTTCTCAGCCGGCATTGCCCTATATGGTATGGTTATGGTGGAAGGCTAAAATGGCTTGAGAGATTCGCATATATAAACACTACGATTTATCCAATCACTGCTATCCCTCTCCTCCTTTACTGTACTTTGCCCGCAGTTTGTCTGCTTACTGGAAAGTTCATCATTCCACAGATTAGTAACCTTGCAAGTATCTGGTTCATATCCCTCTTCCTTTCCATCTTTGCCACCGGCATCCTTGAGATGCGGTGGAGCGGTGTTGGAATAGACGAGTGGTGGAGGAATGAACAATTTTGGGTTATCGGTGGGGTCTCTGCCCATTTCTTTGCTGTCGTCCAGGGTCTTCTCAAAGTACTCGCTGGAATCGACACCAACTTCACTGTCACCTCCAAGGCCTCTGATGAGGATGGTGACTTTGCCGAGCTCTACATGTTCAAATGGACCACCCTCCTCATCCCCCCCACCACCCTCCTCATAGTAAACCTGGTGGGGGTGGTCGCCGGAATATCCTACGCCATCAATAGCGGGTACCAGTCATGGGGCCCGCTTTTCGGTAAATTGTTCTTTGCCTTTTGGGTGATTGTTCATCTTTATCCTTTCCTTAAAGGTCTTATGGGGCGTCAAAACCGGACCCCCACCATTGTTGTCGTGTGGGCCATTCTTCTAGCGTCCATCTTCTCTTTGCTTTGGGTTCGCATCGACCCATTTACTACCCGGGTTACTGGGCCGGATGTCGAGGTGTGCGGAATCAACTGCTGA

Network for GWHGAAZE025199

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14569.7	zf-UDP	14	85	5.20E-37
PF03552.15	Cellulose_synt	345	1067	0

Protein Sequence

>GWHPAAZE025217
MESEGETGEKSLKLGGQVCQICGDNVGKSVDGEPFVACDVCAFPVCRPCYEYEQKDGNQSCPQCKTRYKKHKEIPDVRGDEEEDGYANDGARNVHYSTQNQNGKQKAAERMLGWQMTYGRGEDVGAPNYDKEISHTHIPLLTNGQEVSGELSAASPERLSMASPGPVGGGKGNVLFAGNIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMTTSNAASERGGDIDASTDVLVDDSLLNDEARQPLSRKVSIPSSKINPYRMVIVLRLIILSIFLHYRITNPVLNAYPLWLLSVICEIWFAISWILDQFPKWLPINRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLSFEALSETSEFARKWVPFCKKYSIEPRAPEWYFAQKVDYLKDKVQPSFVKDRRAMKREYEEFKIRVNGLVAKATKIPEEGWIMQDGTPWPGNNTRDHPGMIQVFLGQSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKYVCYVQFPQRFDGIDRSDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKQKKSGFFSSCCGGSRKKSSKSSKNGSDKKKSGKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPEALLKEAIHVISCGYEDKSDWGQEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPIWYGYGGRLKWLERFAYINTTIYPITAIPLLLYCTLPAVCLLTGKFIIPQISNLASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHFFAVVQGLLKVLAGIDTNFTVTSKASDEDGDFAELYMFKWTTLLIPPTTLLIVNLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLLWVRIDPFTTRVTGPDVEVCGINC

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0030244	biological_process	cellulose biosynthetic process
GO:0016020	cellular_component	membrane
GO:0016760	molecular_function	cellulose synthase (UDP-forming) activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	162.235
	SRR3591706	second leaf	110.412
	SRR3591707	mature leaf	65.296
	SRR3591708	Shoot apex	76.019
	SRR3591709	Stem	132.303
	SRR3591710	White floral bud	47.823
	SRR3591711	White flower	36.301
	SRR3591712	Green floral bud	103.870
	SRR3591713	Yellow flower	19.490
SRP173429	SRR8316895	Juvenile bud stage	47.958
	SRR8316896	Juvenile bud stage	58.089
	SRR8316897	Juvenile bud stage	28.635
	SRR8316894	Third green stage	29.270
	SRR8316900	Third green stage	85.356
	SRR8316901	Third green stage	85.302
	SRR8316898	Complete white stage	18.038
	SRR8316899	Complete white stage	109.454
	SRR8316903	Complete white stage	30.039
	SRR8316902	Silver flowering stage	8.599
	SRR8316904	Silver flowering stage	12.323
	SRR8316905	Silver flowering stage	5.352
	SRR8316906	Gold flowering stage	12.032
	SRR8316907	Gold flowering stage	13.273
	SRR8316908	Gold flowering stage	14.670
SRP132670	SRR6706286	Control	65.796
	SRR6706287	Light intensity 50%	73.344
	SRR6706288	Light intensity 20%	83.139
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	44.367
	CNS0095593	Slightly white alabastrum(diploid) 2	51.305
	CNS0095594	Slightly white alabastrum(diploid) 3	41.065
	CNS0095595	Whole white alabastrum(diploid) 2	46.740
	CNS0095596	Whole white alabastrum(diploid) 3	43.614
	CNS0095597	Whole white alabastrum(diploid) 4	44.153
	CNS0095598	Silvery flower (diploied) 1	41.999
	CNS0095599	Silvery flower (diploied) 2	39.554
	CNS0095600	Silvery flower (diploied) 3	35.374
	CNS0095601	Golden flower (diploid) 1	34.481
	CNS0095602	Golden flower (diploid) 2	41.886
	CNS0095603	Golden flower (diploid) 3	38.914
	CNS0095604	Slightly white alabastrum(tetraploid) 1	63.315
	CNS0095605	Slightly white alabastrum(tetraploid) 2	48.998
	CNS0095606	Slightly white alabastrum(tetraploid) 3	132.563
	CNS0095607	Whole white alabastrum(tetraploid) 1	50.679
	CNS0095608	Whole white alabastrum(tetraploid) 2	36.947
	CNS0095609	Whole white alabastrum(tetraploid) 3	81.962
	CNS0095610	Silvery flower (tetraploid) 1	24.644
	CNS0095611	Silvery flower (tetraploid) 2	27.497
	CNS0095612	Silvery flower (tetraploid) 3	14.391
	CNS0095613	Golden flower (tetraploid) 1	6.067
	CNS0095614	Golden flower (tetraploid) 2	19.606
	CNS0095615	Golden flower (tetraploid) 3	5.962
CRA001975	CRR073297	Stem 1	102.266
	CRR073298	Stem 2	97.441
	CRR073299	Stem 3	100.205
	CRR073300	Leaf 1	133.548
	CRR073301	Leaf 2	117.042
	CRR073302	Leaf 3	127.560
	CRR073303	Juvenile bud 1	115.427
	CRR073304	Juvenile bud 2	116.859
	CRR073305	Juvenile bud 3	171.428
	CRR073306	Third green 1	22.390
	CRR073307	Third green 2	23.471
	CRR073308	Third green 3	26.604
	CRR073309	Second white 1	9.152
	CRR073310	Second white 2	5.268
	CRR073311	Second white 3	4.021
	CRR073312	Silver flowering 1	3.161
	CRR073313	Silver flowering 2	5.784
	CRR073314	Silver flowering 3	3.154
	CRR073315	Gold flowering 1	49.724
	CRR073316	Gold flowering 2	82.210
	CRR073317	Gold flowering 3	63.873
	CRR073318	Tawny withering 1	179.483
	CRR073319	Tawny withering 2	105.413
	CRR073320	Tawny withering 3	204.070