Gene detail

Detail information of GWHGAAZE025211

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI24942.3	0	unnamed protein product [Vitis vinifera]
COG	YP_005009197.1	1E-31	Alpha-N-acetylglucosaminidase, Alpha-L-fucosidase
trEMBL	tr\|A0A067L8I2\|A0A067L8I2_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP43563.1}
TAIR10	AT5G13690.1	4E-165	alpha-N-acetylglucosaminidase family / NAGLU family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	57429469	57444689	-
GWHAAZE00000007	mRNA	57429469	57444689	-
GWHAAZE00000007	exon	57444164	57444689	-
GWHAAZE00000007	exon	57443368	57443605	-
GWHAAZE00000007	exon	57442202	57443285	-
GWHAAZE00000007	exon	57442001	57442087	-
GWHAAZE00000007	exon	57436868	57436918	-
GWHAAZE00000007	exon	57435354	57435463	-
GWHAAZE00000007	exon	57435090	57435192	-
GWHAAZE00000007	exon	57433653	57433751	-
GWHAAZE00000007	exon	57432430	57432540	-
GWHAAZE00000007	exon	57431779	57432032	-
GWHAAZE00000007	exon	57430841	57431078	-
GWHAAZE00000007	exon	57430029	57430107	-
GWHAAZE00000007	exon	57429469	57429704	-
GWHAAZE00000007	CDS	57444164	57444689	-
GWHAAZE00000007	CDS	57443368	57443605	-
GWHAAZE00000007	CDS	57442202	57443285	-
GWHAAZE00000007	CDS	57442001	57442087	-
GWHAAZE00000007	CDS	57436868	57436918	-
GWHAAZE00000007	CDS	57435354	57435463	-
GWHAAZE00000007	CDS	57435090	57435192	-
GWHAAZE00000007	CDS	57433653	57433751	-
GWHAAZE00000007	CDS	57432430	57432540	-
GWHAAZE00000007	CDS	57431779	57432032	-
GWHAAZE00000007	CDS	57430841	57431078	-
GWHAAZE00000007	CDS	57430029	57430107	-
GWHAAZE00000007	CDS	57429469	57429704	-

Transcript Sequence
>GWHTAAZE025245 ATGAAGAGTCAGTACCTCCGTCCAGCTGGAAATAGGTATCATTTCAACATTAATGGTAAAGATAAGAGGGAGCAAATGAGTGATAGGGATTATGTAAGGCTTCCTCTCAGAATACCAAGAGCCATCGATCATCCTCTTCGCAAACAAGCAATGGTGAATAGAGATAGAGGCAGAGCAGTTTATGTAGGGTTTGATAAGGGGATTCTAACAGTCAGATTGGAGTTCAAGGAGTTTAGATTCCAGGTGACAGAGCATGGTTCCATGGTTTCTATAACAGAGATCACCAGAAGCAAATCATATGGGATCATTATCGATTTTAAGGCAGCGGAATGGGCCAGTAGAGAACTGAAGAAGGCTGCCGGAGGAGTGGAAAGTAGTCGTTTCTCAAGTAAGTATCAGTTACCGGGTATAATATGGTTATTGCAAAGATATAGTAATGAGAAGGGGATTTTTATGAGTTTGTTAGAAATCAAGGGAGGCATTGTTAGCAGAGAGGAGGTTATTCAGGCTTGTAAAAATGGAGAAGATTTACCGTTAAATTGGTGGAGAAGAGAAGTGTTTGAGAAAATCGGGAATCAATGCGGGGGATTGTTAACAATTGACAAGAGTACAGTAAGTATGTCTAGACTATTTGCTCCTAGAATAAAAGTTAGTGGTAATAGTAGTGGGTTTATTCCGGCAGAGATTGATTTAGTAGGCAATGGGGAGGAGAAATGCACAATACGGTTAAAGGTGTTGAGTAAATTAGATTTGAAAAAACAGGGGGGTCAAGTTCCGAATGCATGTGAAATGGGTGGTGTTAGTCATAAAAATGAGGCTATTAATGAGGGGATGGGAATTATTGATTTGCATAGGAGAGAGAATGAGAGTGATGGTATCAATGAAGGTACAAATATTCTTCAAGCAGGGAAAGGAAAAGTGAGAGAATTTATTGAGGAAGGCAGAAATTATGGGCCTAGAATAAGCGAGGAGGGGGAGGTCGGGCATGCAGAAGATATGGAGCGGGAATGTTGGGGGATAGGAAAAATGAAAGAGGGTGTTAGAGTGTTTAATGATGGCGGGTCAAGTCATTTAAATTTGTTAGGTCCTGGAATGGTAGAAATAAAGGGTGAGACGGGGTTCACTGTAGAAGAAGAAGGGAAAAGGGCTGGGCTGGAGAGTGGGTCGGACAAAATTTTTGAGATAGATGATTTTCAAGTGGCTGTGTCTAAGCTTAAGGGGTGGAGGAAAAAAAACAGCCTTTTTAAATTTAATCGGACAGCTCAAAAACCATTACAATTTTACAGAAGACGTATAAAGCAAAATAAGGTGTCACTTAAATGTAATGATAAAAGGGAAGAAGATTTTGAAGGTGAAGAAATGAAGTGGAAGAAATATTTTAAGGAGAAGGAAGAAAGAGGGTATAACAACGTCAGAGAGTTTGGGGAGGAATCGGCGTTTGGTGACAAGACTATTGTGCAATCAGATTTTGAACACAAGCAGTTTATGATAGATAATAGAGAGAGTGACGATGAAGGTTCTTTTGTGGATAGCAGTTCAGATGAGGAGGGTTCGAAGACTCATAATTTTATTGATAATTTTGACAGAGGTGATGACTGGTTAGATAGATTTTTCTTCGACAGGGAAGCAGATTCATATGTTGGCGTGAATAATGGTGACAGTGAAATACGGTATGCAAGAAGGGAGGGGAAGCAGTTGGTTTTACAAGGGTTAAATGAGGGCAGTCCAGCAGCTTCTATTTCATACAGGTTGGGGAATAGTAATGGAGTTGTTTTCACAATCTATAGAGGAGGATATGGGGCTGAGATTTTGGCCAATAAATTAACTATGTCCGTGTTTTATGAGAAGGTGGGGAAGGAGAATGTTATAGAGAATAAGGCAACAAATGCAAGTTGTGTAATGGTGGAGGAAGGGAATGAAAACAGCAACAAAAGGGGCTGGTTATTCTACTCAGACTCATCATTCTGGCAACCACCGCAAATGAAAGCGCTTCTACATTCTGTACCATTTGGGAAGATGATAGTTCTTGATCTATTTGCTGATGTCACACCCATATGGAAGTCTTCCTCTCAATTTTACGGCACTCCTTATGTCTGGTGTATGCTCCACAATTTTGGTGGAAACATTGAAATGTATGGCATTTTGGATGCGGTTGCTTCGGGTCCTGTGGATGCTCGTGTTAGTGAAAAGTCAACCATGGTTGGTGTTGGCATGTGCATGGAAGGAATAGAACAAAATCCGGTTGTCTATGAACTGATGTCCGAAATGGCATTTCGAAGTGATAGAGTCCAACTTGGGGAATGGTTGAAAACCTACTCTTTTAGGCGTTATGGAAAAGCAGTTAATCCGGTTAATGTGGCTTGGGAAATTCTTCATTGCACAATATACAATTGCACAGATGGAATTGCTGATCATAACATAGATTTCATAGTTAAGTTTCCCGACTGGGACCCATCGTGGAACATGAATTCTGACATCTCCAAACAGAATCAGACACGAAAGCTCATCGTGCAACACACCAGAAACAGAAGATTCTCTTTCCATGAAACAAGCTCTCAGGCCCTACCACAGTCACATTTATGGTATCCTACTTGGGATGTCATTGATGCGTTAAGTTTATTCCTTGACGCAAAAAATGATCTAAATGGAAGCCTCACATATAGATATGACTTAGTTGACTTAACAAGACAAGTGCTATCAAAGCTTGCAAACCAGGTGTATTTGGATGCAGTTATTGCTTTCCAGGATAAGGATGCAAAAGCTTTGAGTTCCCATAGTCAAACATTCCTTCAACTTGTCGAGGACATCGATAATCTTCTTGCTGCCGATGATAATTTTCTTCTCGGAACTTGGCTCGAGAGTGCAAAAAAGCTCGCCTTAAACTCAAATGAGCTTCGGCAGTATGAGTGGAACGCAAGAACACAAGTGACAATGTGGTATGATACAACAGATTCCGTTCAAAGCAAACTTCACGATTATGCGAACAAGTTTTGGAGCGGATTATTGCGTGATTATTATTTGCCACGCGCGTCAATGTATTTCAATTATCTATCAAAAAGCTTGAGAGAAAATAAGCAGTTCAAGTTGGAGGAATGGAATAGAGAATGGATAGCATTTTCAAACAAATGGCAAGCAAGTAATAATATTTACCCTGTGAAGGCTCACGGGGATGCTTTTGCTATTTCAAGTGAACTATTTAAGAAATATTTTGGTTAA

Network for GWHGAAZE025211

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05089.13	NAGLU	645	759	3.10E-42
PF12972.8	NAGLU_C	768	1068	3.40E-83

Protein Sequence

>GWHPAAZE025229
MKSQYLRPAGNRYHFNINGKDKREQMSDRDYVRLPLRIPRAIDHPLRKQAMVNRDRGRAVYVGFDKGILTVRLEFKEFRFQVTEHGSMVSITEITRSKSYGIIIDFKAAEWASRELKKAAGGVESSRFSSKYQLPGIIWLLQRYSNEKGIFMSLLEIKGGIVSREEVIQACKNGEDLPLNWWRREVFEKIGNQCGGLLTIDKSTVSMSRLFAPRIKVSGNSSGFIPAEIDLVGNGEEKCTIRLKVLSKLDLKKQGGQVPNACEMGGVSHKNEAINEGMGIIDLHRRENESDGINEGTNILQAGKGKVREFIEEGRNYGPRISEEGEVGHAEDMERECWGIGKMKEGVRVFNDGGSSHLNLLGPGMVEIKGETGFTVEEEGKRAGLESGSDKIFEIDDFQVAVSKLKGWRKKNSLFKFNRTAQKPLQFYRRRIKQNKVSLKCNDKREEDFEGEEMKWKKYFKEKEERGYNNVREFGEESAFGDKTIVQSDFEHKQFMIDNRESDDEGSFVDSSSDEEGSKTHNFIDNFDRGDDWLDRFFFDREADSYVGVNNGDSEIRYARREGKQLVLQGLNEGSPAASISYRLGNSNGVVFTIYRGGYGAEILANKLTMSVFYEKVGKENVIENKATNASCVMVEEGNENSNKRGWLFYSDSSFWQPPQMKALLHSVPFGKMIVLDLFADVTPIWKSSSQFYGTPYVWCMLHNFGGNIEMYGILDAVASGPVDARVSEKSTMVGVGMCMEGIEQNPVVYELMSEMAFRSDRVQLGEWLKTYSFRRYGKAVNPVNVAWEILHCTIYNCTDGIADHNIDFIVKFPDWDPSWNMNSDISKQNQTRKLIVQHTRNRRFSFHETSSQALPQSHLWYPTWDVIDALSLFLDAKNDLNGSLTYRYDLVDLTRQVLSKLANQVYLDAVIAFQDKDAKALSSHSQTFLQLVEDIDNLLAADDNFLLGTWLESAKKLALNSNELRQYEWNARTQVTMWYDTTDSVQSKLHDYANKFWSGLLRDYYLPRASMYFNYLSKSLRENKQFKLEEWNREWIAFSNKWQASNNIYPVKAHGDAFAISSELFKKYFG

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01205	NAGLU	Metabolic pathways	map01100
		Glycosaminoglycan degradation	map00531
		Lysosome	map04142

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.131
	SRR3591706	second leaf	5.122
	SRR3591707	mature leaf	5.615
	SRR3591708	Shoot apex	4.833
	SRR3591709	Stem	3.762
	SRR3591710	White floral bud	1.402
	SRR3591711	White flower	1.316
	SRR3591712	Green floral bud	1.466
	SRR3591713	Yellow flower	0.496
SRP173429	SRR8316895	Juvenile bud stage	7.686
	SRR8316896	Juvenile bud stage	10.958
	SRR8316897	Juvenile bud stage	4.617
	SRR8316894	Third green stage	4.692
	SRR8316900	Third green stage	12.324
	SRR8316901	Third green stage	11.366
	SRR8316898	Complete white stage	5.570
	SRR8316899	Complete white stage	20.186
	SRR8316903	Complete white stage	10.435
	SRR8316902	Silver flowering stage	5.629
	SRR8316904	Silver flowering stage	8.111
	SRR8316905	Silver flowering stage	2.993
	SRR8316906	Gold flowering stage	7.932
	SRR8316907	Gold flowering stage	8.236
	SRR8316908	Gold flowering stage	6.611
SRP132670	SRR6706286	Control	5.861
	SRR6706287	Light intensity 50%	7.063
	SRR6706288	Light intensity 20%	8.898
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.558
	CNS0095593	Slightly white alabastrum(diploid) 2	9.828
	CNS0095594	Slightly white alabastrum(diploid) 3	7.981
	CNS0095595	Whole white alabastrum(diploid) 2	9.501
	CNS0095596	Whole white alabastrum(diploid) 3	8.142
	CNS0095597	Whole white alabastrum(diploid) 4	9.053
	CNS0095598	Silvery flower (diploied) 1	9.790
	CNS0095599	Silvery flower (diploied) 2	9.920
	CNS0095600	Silvery flower (diploied) 3	12.234
	CNS0095601	Golden flower (diploid) 1	9.705
	CNS0095602	Golden flower (diploid) 2	9.435
	CNS0095603	Golden flower (diploid) 3	8.147
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.470
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.211
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.672
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.707
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.132
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.268
	CNS0095610	Silvery flower (tetraploid) 1	12.141
	CNS0095611	Silvery flower (tetraploid) 2	9.592
	CNS0095612	Silvery flower (tetraploid) 3	8.764
	CNS0095613	Golden flower (tetraploid) 1	4.083
	CNS0095614	Golden flower (tetraploid) 2	6.312
	CNS0095615	Golden flower (tetraploid) 3	3.344
CRA001975	CRR073297	Stem 1	10.927
	CRR073298	Stem 2	8.854
	CRR073299	Stem 3	5.531
	CRR073300	Leaf 1	13.483
	CRR073301	Leaf 2	11.385
	CRR073302	Leaf 3	9.038
	CRR073303	Juvenile bud 1	10.751
	CRR073304	Juvenile bud 2	6.040
	CRR073305	Juvenile bud 3	9.258
	CRR073306	Third green 1	5.558
	CRR073307	Third green 2	6.335
	CRR073308	Third green 3	5.675
	CRR073309	Second white 1	6.502
	CRR073310	Second white 2	4.914
	CRR073311	Second white 3	3.856
	CRR073312	Silver flowering 1	1.252
	CRR073313	Silver flowering 2	1.761
	CRR073314	Silver flowering 3	0.831
	CRR073315	Gold flowering 1	2.272
	CRR073316	Gold flowering 2	4.928
	CRR073317	Gold flowering 3	2.046
	CRR073318	Tawny withering 1	4.258
	CRR073319	Tawny withering 2	5.707
	CRR073320	Tawny withering 3	3.844