Gene detail

Detail information of GWHGAAZE025234

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009605008.1	2.8296E-129	PREDICTED: myosin heavy chain kinase B [Nicotiana tomentosiformis]
COG	YP_002463148.1	4E-18	NB-ARC domain-containing protein
Swissprot	tr\|Q9FE91\|C3H62_ARATH	9E-12	Zinc finger CCCH domain-containing protein 62
trEMBL	tr\|A0A068V6M8\|A0A068V6M8_COFCA	6E-127	Coffea canephora DH200=94 genomic scaffold, scaffold_126 {ECO:0000313\|EMBL:CDP16445.1}
TAIR10	AT3G51930.1	5E-80	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	57869998	57870840	-
GWHAAZE00000007	mRNA	57869998	57870840	-
GWHAAZE00000007	exon	57869998	57870840	-
GWHAAZE00000007	CDS	57869998	57870840	-

Transcript Sequence
>GWHTAAZE025268 ATGAGTTCCGAGAATGTGTTTAAATTGGCTGATACGTTGCCAACAAGGAAGGATTATTTGGGGAATTTTATGAAGAAGGGGAATCATGTGAAAACAAGAATGCGCACCAAGTGTTTGTGGATTTCGCACAGTGACAGTGTTTCTTGTTTGGCTGTTGATAATGAGTTGATGTATTCAGGTTCTTGGGATAAAACTATTAAGGTGTGGAGGGTGTCAGATTTGAAGTGTTTGGAGTCAATTAAGGCGCACGATGATGCCATTAATGAGTTGGTTTCAAGAAATGGGGTTGTTTATTCAGCATCCGCGGATGGGAAAATCAAGGCATGGGGGAAAGAAGAGGGGAAGAAGGGGTTGGGTTTTCATTCATTGAAGGGTGTTCTCGAGGGTCATAAGGATGTATCGATGAATTCAGTGGTGGTTTCTGATGATGGGGGGGTTGTTTATGGAGGTAGCTCAGACGGGTATATAATGGGTTGGGTCAAGATTGGGGGTTTTAAGAGGTACAAGATTCTTTGTGAGGTTAAAGCACATAAAATGGCAGTTTTGTGTATGTGCTTAAAAGGGGAAGTTTTATGCAGTGGCTCTGCAGATAAGAGTATTGGGATATGGAGGAGAGGGATTGATGGTGTTGGGGTTTATAGAGTTGGGGTAATAAGTGGGCATGAAGGGCCAGTGAAGTGCTTGCAAGCTTCTGATAGTAGTGTTGGTGGTGGGTTTTTGCTGTATAGTGGTAGCCTAGATAGAAGTTTGAGAGTTTGGTGGGTGCCTATGTACACTGATAAAAAAGAGGACGCCTTTAGTACTATTCAATGTAAAGAACATAAGGAGTTTATTTCTTGGTAA

Network for GWHGAAZE025234

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	37	69	0.00042
PF00400.33	WD40	125	159	0.16
PF00400.33	WD40	216	253	0.0046

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.358
	SRR3591706	second leaf	0.314
	SRR3591707	mature leaf	0.048
	SRR3591708	Shoot apex	1.028
	SRR3591709	Stem	0.268
	SRR3591710	White floral bud	1.390
	SRR3591711	White flower	1.257
	SRR3591712	Green floral bud	0.640
	SRR3591713	Yellow flower	0.401
SRP173429	SRR8316895	Juvenile bud stage	2.395
	SRR8316896	Juvenile bud stage	3.809
	SRR8316897	Juvenile bud stage	0.950
	SRR8316894	Third green stage	0.412
	SRR8316900	Third green stage	0.807
	SRR8316901	Third green stage	1.107
	SRR8316898	Complete white stage	0.253
	SRR8316899	Complete white stage	0.722
	SRR8316903	Complete white stage	0.394
	SRR8316902	Silver flowering stage	0.065
	SRR8316904	Silver flowering stage	0.237
	SRR8316905	Silver flowering stage	0.117
	SRR8316906	Gold flowering stage	0.431
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.284
SRP132670	SRR6706286	Control	0.213
	SRR6706287	Light intensity 50%	0.380
	SRR6706288	Light intensity 20%	0.498
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.428
	CNS0095593	Slightly white alabastrum(diploid) 2	0.033
	CNS0095594	Slightly white alabastrum(diploid) 3	1.423
	CNS0095595	Whole white alabastrum(diploid) 2	0.227
	CNS0095596	Whole white alabastrum(diploid) 3	0.139
	CNS0095597	Whole white alabastrum(diploid) 4	0.685
	CNS0095598	Silvery flower (diploied) 1	1.248
	CNS0095599	Silvery flower (diploied) 2	1.205
	CNS0095600	Silvery flower (diploied) 3	0.102
	CNS0095601	Golden flower (diploid) 1	1.489
	CNS0095602	Golden flower (diploid) 2	0.237
	CNS0095603	Golden flower (diploid) 3	0.861
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.662
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.544
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.220
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.272
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.094
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.722
	CNS0095610	Silvery flower (tetraploid) 1	0.173
	CNS0095611	Silvery flower (tetraploid) 2	0.082
	CNS0095612	Silvery flower (tetraploid) 3	0.145
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.132
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.565
	CRR073298	Stem 2	1.754
	CRR073299	Stem 3	0.783
	CRR073300	Leaf 1	0.597
	CRR073301	Leaf 2	0.513
	CRR073302	Leaf 3	0.141
	CRR073303	Juvenile bud 1	0.045
	CRR073304	Juvenile bud 2	0.176
	CRR073305	Juvenile bud 3	0.113
	CRR073306	Third green 1	0.197
	CRR073307	Third green 2	0.082
	CRR073308	Third green 3	0.461
	CRR073309	Second white 1	0.068
	CRR073310	Second white 2	0.197
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.160
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.012
	CRR073316	Gold flowering 2	0.031
	CRR073317	Gold flowering 3	0.028
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000