Gene detail

Detail information of GWHGAAZE025235

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006345361.1	0	PREDICTED: probable inactive purple acid phosphatase 27-like, partial [Solanum tuberosum]
COG	YP_003093614.1	2E-14	metallophosphoesterase
Swissprot	tr\|Q5MAU8\|PPA27_ARATH	5E-97	Probable inactive purple acid phosphatase 27 (Precursor)
trEMBL	tr\|W1PBU4\|W1PBU4_AMBTC	0	Purple acid phosphatase {ECO:0000256\|RuleBase:RU361203}
TAIR10	AT5G50400.1	2E-84	purple acid phosphatase 27

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	57877625	57893372	-
GWHAAZE00000007	mRNA	57877625	57893372	-
GWHAAZE00000007	exon	57877625	57877867	-
GWHAAZE00000007	exon	57878673	57878763	-
GWHAAZE00000007	exon	57879920	57879987	-
GWHAAZE00000007	exon	57880718	57880904	-
GWHAAZE00000007	exon	57881931	57882118	-
GWHAAZE00000007	exon	57883019	57883052	-
GWHAAZE00000007	exon	57884710	57884827	-
GWHAAZE00000007	exon	57889113	57889221	-
GWHAAZE00000007	exon	57889888	57890157	-
GWHAAZE00000007	exon	57890902	57890989	-
GWHAAZE00000007	exon	57893158	57893372	-
GWHAAZE00000007	CDS	57893158	57893372	-
GWHAAZE00000007	CDS	57890902	57890989	-
GWHAAZE00000007	CDS	57889888	57890157	-
GWHAAZE00000007	CDS	57889113	57889221	-
GWHAAZE00000007	CDS	57884710	57884827	-
GWHAAZE00000007	CDS	57883019	57883052	-
GWHAAZE00000007	CDS	57881931	57882118	-
GWHAAZE00000007	CDS	57880718	57880904	-
GWHAAZE00000007	CDS	57879920	57879987	-
GWHAAZE00000007	CDS	57878673	57878763	-
GWHAAZE00000007	CDS	57877625	57877867	-

Transcript Sequence
>GWHTAAZE025269 ATGGCCGAATTTGCGAACCATACAGCTATATCAGATTTTCGGGTTCTTAACAGAAGAAGTTTGGGTGTTTGCCCCGATCCAAATCCATATCTTCAAATCAATGTATCATCGAATAATCCCCTTTCCGATGAACAAAATGTTACGGTTACCGTCAGCGGAGTTTTATCTCCTTCATCCTCCGATTGGGTCGCCATGGTCTCTCCTTCTCATGTCGATGTAAATAGCTGTCCGTTTAAAGCAATTATGTATGAGCAGACCGGTGATTTTAGTATCCTACCACTTCTCTGCCATTATCCTGTGAAGGCACAATATGCAAGCAATGACCCGGACTATCTAAAATGCAAGAAGAAAGAATGCAAGATACATGGTCAAAATGGGATTTGCGATGTTTCGACATGCAGTGCATCACTAAAATTCCACGTCATCAATATCAGAACTGATATCGAGTTTGTGTTCTTCGCCGGTGGATTTTTGACACCTTGCATTTTGAAAAGATCTCAGCCCCTCACTTTTTCAAACCCCAAAATGCCATTATACGCACATCTCTCCAGCCCTGATTGTCATGCAGACTCGATGAGAGTAACATGGGTTAGTGGGGATAAAGAGCCTCAGAAGGTTGAATATGGAAATGGCAAATCTCTGGTATCACAAGTTTCTACCTTCACACAGAATGACATGTGCCGTACAAAATTACTGGATAGTCCGGCCAAAGATTTCGGGTGGCATGACCCGGGTTTCATTCATACAGCAGTGATGACCGGTCTCCAGCCTTCCACCAAATTCTCTTACAGATATGGAAGAGTACATGTACATAGTACTACAAGTGAAAGCAATCCAGGATCTTTATCAGTGGTGGAAGCGATTGAAGAGGAAGTATCAAAGGGGAGTATAGACTCAATATTCCATATAGGGGACATAAGCTATGCTACAGGTTTTCTAGTTGAGTGGGATTTCTTCCTTCACCTCATCTCCCCTATTGCTTCTCGTCTTTCCTACATGACAGCCATTGGAAACCATGAGAGGGATTACGGGGACTCGGGATCGGTGTACGGTACACCGGATTCAGGTGGAGAGTGTGGGGTCCCGTACGAGACTTATTTTCCGATGCCCACGCTTGCAAAAGATAAGCCTTGGTATTTTATTGAAATTGGTCCTATTCACTTCACTGTTATTTCCACTGAACATGATTGGTCCCAAAACTCTGAACAGTATGAGTGGATGAAGAAGGATATGGCTATTCTTGATCGGGCCAGAACTCCTTGGTTAATCTTTATTGGGCACAGGCCCATGTATTCTTCCTATGTGGGGTTTGGGGGTCCTGACAGTAAATTTACAAAAGCCGTAGAGCCATTGCTACTCGCCAACCAGGTGGATTTGGTTCTAGTTGGTCATGTACATAACTACGAGAGAACCTGCGAGGTGTTTGCAAACAAATGCAAGGCATTGCCTTCAAAGGATGCAAACGGAACAGATATTTACAATAATGCCATCTATAGTGCTCCCGTTCACGTTGTTATTGGAATGGCTGGTTTCAAATTGGACGAATTCCCTCCCATTGTAAGAACACACTTGTTTCATTTTATTTCCCGATTTTTCAATTTAAGAATCTAG

Network for GWHGAAZE025235

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0121

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF17808.2	fn3_PAP	41	173	2.20E-37
PF16656.6	Pur_ac_phosph_N	180	269	7.10E-11
PF00149.29	Metallophos	277	468	1.00E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003993	molecular_function	acid phosphatase activity
GO:0046872	molecular_function	metal ion binding
GO:0016787	molecular_function	hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.281
	SRR3591706	second leaf	18.659
	SRR3591707	mature leaf	22.099
	SRR3591708	Shoot apex	4.437
	SRR3591709	Stem	0.990
	SRR3591710	White floral bud	20.378
	SRR3591711	White flower	1.367
	SRR3591712	Green floral bud	42.988
	SRR3591713	Yellow flower	3.632
SRP173429	SRR8316895	Juvenile bud stage	76.015
	SRR8316896	Juvenile bud stage	72.277
	SRR8316897	Juvenile bud stage	25.467
	SRR8316894	Third green stage	14.214
	SRR8316900	Third green stage	9.551
	SRR8316901	Third green stage	11.067
	SRR8316898	Complete white stage	3.727
	SRR8316899	Complete white stage	1.865
	SRR8316903	Complete white stage	6.625
	SRR8316902	Silver flowering stage	2.322
	SRR8316904	Silver flowering stage	2.456
	SRR8316905	Silver flowering stage	1.124
	SRR8316906	Gold flowering stage	1.534
	SRR8316907	Gold flowering stage	2.124
	SRR8316908	Gold flowering stage	1.067
SRP132670	SRR6706286	Control	30.687
	SRR6706287	Light intensity 50%	36.499
	SRR6706288	Light intensity 20%	42.347
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.144
	CNS0095593	Slightly white alabastrum(diploid) 2	5.462
	CNS0095594	Slightly white alabastrum(diploid) 3	21.819
	CNS0095595	Whole white alabastrum(diploid) 2	2.979
	CNS0095596	Whole white alabastrum(diploid) 3	2.489
	CNS0095597	Whole white alabastrum(diploid) 4	1.916
	CNS0095598	Silvery flower (diploied) 1	1.923
	CNS0095599	Silvery flower (diploied) 2	2.098
	CNS0095600	Silvery flower (diploied) 3	1.750
	CNS0095601	Golden flower (diploid) 1	1.080
	CNS0095602	Golden flower (diploid) 2	2.574
	CNS0095603	Golden flower (diploid) 3	1.956
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.301
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.239
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.435
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.625
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.534
	CNS0095609	Whole white alabastrum(tetraploid) 3	89.144
	CNS0095610	Silvery flower (tetraploid) 1	2.697
	CNS0095611	Silvery flower (tetraploid) 2	3.012
	CNS0095612	Silvery flower (tetraploid) 3	5.928
	CNS0095613	Golden flower (tetraploid) 1	2.920
	CNS0095614	Golden flower (tetraploid) 2	3.274
	CNS0095615	Golden flower (tetraploid) 3	2.851
CRA001975	CRR073297	Stem 1	94.142
	CRR073298	Stem 2	56.069
	CRR073299	Stem 3	125.020
	CRR073300	Leaf 1	5.627
	CRR073301	Leaf 2	3.777
	CRR073302	Leaf 3	4.293
	CRR073303	Juvenile bud 1	0.590
	CRR073304	Juvenile bud 2	3.639
	CRR073305	Juvenile bud 3	0.635
	CRR073306	Third green 1	4.900
	CRR073307	Third green 2	1.776
	CRR073308	Third green 3	2.723
	CRR073309	Second white 1	0.997
	CRR073310	Second white 2	0.724
	CRR073311	Second white 3	0.631
	CRR073312	Silver flowering 1	0.491
	CRR073313	Silver flowering 2	0.179
	CRR073314	Silver flowering 3	0.703
	CRR073315	Gold flowering 1	3.347
	CRR073316	Gold flowering 2	5.040
	CRR073317	Gold flowering 3	2.289
	CRR073318	Tawny withering 1	0.537
	CRR073319	Tawny withering 2	1.233
	CRR073320	Tawny withering 3	0.385