Detail information of GWHGAAZE025236


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002513107.17.68223E-86transcription factor, putative [Ricinus communis]
Swissprottr|Q9LPR8|SCL3_ARATH3E-69Scarecrow-like protein 3
trEMBLtr|B9RGF5|B9RGF5_RICCO3E-86Transcription factor, putative {ECO:0000313|EMBL:EEF49610.1}
TAIR10AT1G50420.14E-58scarecrow-like 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene5790995557910380+
GWHAAZE00000007mRNA5790995557910380+
GWHAAZE00000007exon5790995557910380+
GWHAAZE00000007CDS5790995557910380+
Transcript Sequence

Network for GWHGAAZE025236

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03514.15GRAS11361.50E-53
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGRAS

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.119
SRR3591706second leaf9.219
SRR3591707mature leaf14.527
SRR3591708Shoot apex20.944
SRR3591709Stem19.261
SRR3591710White floral bud5.438
SRR3591711White flower12.070
SRR3591712Green floral bud5.718
SRR3591713Yellow flower3.433
SRP173429 SRR8316895Juvenile bud stage 12.317
SRR8316896Juvenile bud stage 10.769
SRR8316897Juvenile bud stage 3.803
SRR8316894Third green stage 6.214
SRR8316900Third green stage 8.176
SRR8316901Third green stage 7.195
SRR8316898Complete white stage 4.433
SRR8316899Complete white stage 8.289
SRR8316903Complete white stage 8.501
SRR8316902Silver flowering stage7.110
SRR8316904Silver flowering stage4.959
SRR8316905Silver flowering stage1.545
SRR8316906Gold flowering stage 7.018
SRR8316907Gold flowering stage 12.771
SRR8316908Gold flowering stage 9.303
SRP132670SRR6706286Control5.492
SRR6706287Light intensity 50%6.808
SRR6706288Light intensity 20%7.863
CNP0000432CNS0095592Slightly white alabastrum(diploid) 118.496
CNS0095593Slightly white alabastrum(diploid) 218.644
CNS0095594Slightly white alabastrum(diploid) 310.879
CNS0095595Whole white alabastrum(diploid) 26.301
CNS0095596Whole white alabastrum(diploid) 32.662
CNS0095597Whole white alabastrum(diploid) 43.881
CNS0095598Silvery flower (diploied) 128.733
CNS0095599Silvery flower (diploied) 216.557
CNS0095600Silvery flower (diploied) 311.007
CNS0095601Golden flower (diploid) 125.672
CNS0095602Golden flower (diploid) 29.674
CNS0095603Golden flower (diploid) 312.635
CNS0095604Slightly white alabastrum(tetraploid) 19.620
CNS0095605Slightly white alabastrum(tetraploid) 28.150
CNS0095606Slightly white alabastrum(tetraploid) 315.823
CNS0095607Whole white alabastrum(tetraploid) 19.171
CNS0095608Whole white alabastrum(tetraploid) 23.565
CNS0095609Whole white alabastrum(tetraploid) 33.460
CNS0095610Silvery flower (tetraploid) 111.047
CNS0095611Silvery flower (tetraploid) 210.167
CNS0095612Silvery flower (tetraploid) 321.425
CNS0095613Golden flower (tetraploid) 113.430
CNS0095614Golden flower (tetraploid) 25.389
CNS0095615Golden flower (tetraploid) 37.854
CRA001975CRR073297Stem 112.441
CRR073298Stem 29.387
CRR073299Stem 33.052
CRR073300Leaf 111.862
CRR073301Leaf 212.908
CRR073302Leaf 31.416
CRR073303Juvenile bud 12.120
CRR073304Juvenile bud 21.577
CRR073305Juvenile bud 35.894
CRR073306Third green 119.190
CRR073307Third green 210.893
CRR073308Third green 39.525
CRR073309Second white 124.324
CRR073310Second white 216.371
CRR073311Second white 318.616
CRR073312Silver flowering 120.233
CRR073313Silver flowering 223.401
CRR073314Silver flowering 314.882
CRR073315Gold flowering 18.395
CRR073316Gold flowering 25.154
CRR073317Gold flowering 32.590
CRR073318Tawny withering 16.522
CRR073319Tawny withering 26.212
CRR073320Tawny withering 36.627