Gene detail

Detail information of GWHGAAZE025246

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002278297.1	2.237E-155	PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Vitis vinifera]
COG	YP_002432131.1	2E-65	ribose 5-phosphate isomerase
Swissprot	tr\|Q9S726\|RPI3_ARATH	1E-135	Probable ribose-5-phosphate isomerase 3, chloroplastic (Precursor)
trEMBL	tr\|F6HTS6\|F6HTS6_VITVI	8E-156	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58087.1}
TAIR10	AT3G04790.1	6E-93	Ribose 5-phosphate isomerase, type A protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	58072524	58075757	+
GWHAAZE00000007	mRNA	58072524	58075757	+
GWHAAZE00000007	exon	58072524	58073018	+
GWHAAZE00000007	exon	58073694	58074073	+
GWHAAZE00000007	exon	58075617	58075757	+
GWHAAZE00000007	CDS	58072524	58073018	+
GWHAAZE00000007	CDS	58073694	58074068	+
GWHAAZE00000007	three_prime_UTR	58074069	58074073	+
GWHAAZE00000007	three_prime_UTR	58075617	58075757	+

Transcript Sequence
>GWHTAAZE025280 ATGGCCTCCTCCTTATCCCTCATATCCCCACCTCTATCATCCCCTCTCCACCACCACCACCACCACAACCTCCTACCCAACTCCACCTCCCCTCTTATCCTGCGCACCCCCTCCGTTAACCTGCGGACCCCCTCAATAATCACCCACTCTTCCCCCACCTCCTCCGCACTAACCCAAGACGACCTCAAGAAGCTCGCCGCCGACAAGGCCGTGGATTACGTCAAGAGCGGCATGGTCCTTGGCCTCGGAACAGGCTCCACCGCCGCATTCGTGGTCTCCAAGATCGGCGAGCTCCTCAAGTCAGGTGAATTGAAGGACATTGTTGGTGTACCCACTTCAAAAAGAACCTATGAGCAAGCGCTCTCTCTTGGAATTCCTCTATCCATTCTTGATGATCACCCCCACCTCGATCTTGCCATCGATGGCGCCGATGAGGTCGACCCCGATCTCAATTTGGTAAAGGGCCGTGGCGGGGCCCTCCTCCGCGAGAAGATGGTGGAAGCGGCATCGGATAAGTTTGTGGTGGTGGTCGACGATTCAAAATTGGTGGATGGGCTCGGCGGCAGTGGGCTAGCTATGCCAGTCGAAGTGGTTCAGTTTTGTTGGAAGTATAATTTGGTGAGGCTTCAAGAATTGTTCAAGGAGGAAGGGTGTGAGGCTAGATTGAGATTGGACGGTGGCAAGCCTTATGTCACTGATAATATGAATTACATTGTGGATTTGTACTTCAAGACTCCAATCAAGGATTCGCTTGCCGCGGGTAAGGAGATCTCGGCTTTTGAAGGAGTTGTGGAACACGGGTTGTTCTTAGATATGGCAACGTCGGTGATCATTGCTGGATCTGATGGAGTTAGTGAAAAGACCAAGTGATAACGCATGTGTTGCGGATTATAAATGAACATACCCAAATTTACATTCTTGCGGATTCAAACTAAATGGATGAAGTGCGATAGAGGCTCCAAACCCGAGTAAACAAGAATGAACACACATTGCCAACGTGTACGTGGTTCAGCCAA

Network for GWHGAAZE025246

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06026.15	Rib_5-P_isom_A	108	283	6.40E-61

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01807	rpiA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Pentose phosphate pathway	map00030
		Carbon fixation in photosynthetic organisms	map00710

Gene Ontology

GO term	Ontology	Name
GO:0009052	biological_process	pentose-phosphate shunt, non-oxidative branch
GO:0004751	molecular_function	ribose-5-phosphate isomerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	99.123
	SRR3591706	second leaf	325.291
	SRR3591707	mature leaf	233.643
	SRR3591708	Shoot apex	141.729
	SRR3591709	Stem	56.160
	SRR3591710	White floral bud	66.702
	SRR3591711	White flower	82.163
	SRR3591712	Green floral bud	91.630
	SRR3591713	Yellow flower	99.096
SRP173429	SRR8316895	Juvenile bud stage	61.998
	SRR8316896	Juvenile bud stage	68.996
	SRR8316897	Juvenile bud stage	40.292
	SRR8316894	Third green stage	22.616
	SRR8316900	Third green stage	91.134
	SRR8316901	Third green stage	80.731
	SRR8316898	Complete white stage	21.468
	SRR8316899	Complete white stage	73.887
	SRR8316903	Complete white stage	32.392
	SRR8316902	Silver flowering stage	31.673
	SRR8316904	Silver flowering stage	33.818
	SRR8316905	Silver flowering stage	19.740
	SRR8316906	Gold flowering stage	64.282
	SRR8316907	Gold flowering stage	71.211
	SRR8316908	Gold flowering stage	66.040
SRP132670	SRR6706286	Control	77.508
	SRR6706287	Light intensity 50%	73.731
	SRR6706288	Light intensity 20%	86.062
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	76.994
	CNS0095593	Slightly white alabastrum(diploid) 2	68.931
	CNS0095594	Slightly white alabastrum(diploid) 3	58.490
	CNS0095595	Whole white alabastrum(diploid) 2	58.048
	CNS0095596	Whole white alabastrum(diploid) 3	66.520
	CNS0095597	Whole white alabastrum(diploid) 4	60.818
	CNS0095598	Silvery flower (diploied) 1	69.052
	CNS0095599	Silvery flower (diploied) 2	83.936
	CNS0095600	Silvery flower (diploied) 3	90.804
	CNS0095601	Golden flower (diploid) 1	76.006
	CNS0095602	Golden flower (diploid) 2	89.774
	CNS0095603	Golden flower (diploid) 3	88.719
	CNS0095604	Slightly white alabastrum(tetraploid) 1	71.782
	CNS0095605	Slightly white alabastrum(tetraploid) 2	70.001
	CNS0095606	Slightly white alabastrum(tetraploid) 3	87.160
	CNS0095607	Whole white alabastrum(tetraploid) 1	42.629
	CNS0095608	Whole white alabastrum(tetraploid) 2	47.978
	CNS0095609	Whole white alabastrum(tetraploid) 3	89.386
	CNS0095610	Silvery flower (tetraploid) 1	100.419
	CNS0095611	Silvery flower (tetraploid) 2	122.118
	CNS0095612	Silvery flower (tetraploid) 3	110.862
	CNS0095613	Golden flower (tetraploid) 1	83.781
	CNS0095614	Golden flower (tetraploid) 2	93.996
	CNS0095615	Golden flower (tetraploid) 3	76.654
CRA001975	CRR073297	Stem 1	120.753
	CRR073298	Stem 2	123.957
	CRR073299	Stem 3	164.041
	CRR073300	Leaf 1	97.235
	CRR073301	Leaf 2	107.447
	CRR073302	Leaf 3	111.512
	CRR073303	Juvenile bud 1	125.725
	CRR073304	Juvenile bud 2	134.938
	CRR073305	Juvenile bud 3	116.020
	CRR073306	Third green 1	84.187
	CRR073307	Third green 2	52.050
	CRR073308	Third green 3	61.876
	CRR073309	Second white 1	109.028
	CRR073310	Second white 2	70.684
	CRR073311	Second white 3	68.433
	CRR073312	Silver flowering 1	93.219
	CRR073313	Silver flowering 2	105.603
	CRR073314	Silver flowering 3	82.493
	CRR073315	Gold flowering 1	539.696
	CRR073316	Gold flowering 2	560.728
	CRR073317	Gold flowering 3	603.702
	CRR073318	Tawny withering 1	103.126
	CRR073319	Tawny withering 2	102.665
	CRR073320	Tawny withering 3	91.920