Gene detail

Detail information of GWHGAAZE025255

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP18031.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9S745\|PAD4_ARATH	1E-108	Lipase-like PAD4
trEMBL	tr\|A0A068VBC6\|A0A068VBC6_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_198 {ECO:0000313\|EMBL:CDP18031.1}
TAIR10	AT3G52430.1	9E-91	alpha/beta-Hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	58219838	58223218	-
GWHAAZE00000007	mRNA	58219838	58223218	-
GWHAAZE00000007	exon	58219838	58220641	-
GWHAAZE00000007	exon	58222484	58223218	-
GWHAAZE00000007	CDS	58222484	58223218	-
GWHAAZE00000007	CDS	58219838	58220641	-

Transcript Sequence
>GWHTAAZE025289 ATGTCCATGCAGATACTTGAAATAATGAACAAGAACAAGCCAGTAGTCTTCACAGGCCACTCAATTGGAGGAACAATTGCTTCTCTTTCGGCCCTTTGGCTCCTCTCCTCCCTCCAATCCCTCTCCACCTCCCTCTCGATCCTCTGCATCACCTTCGGCTCACCCTTGCTCGGCAACGAGCCCCTCTCCACCTCCATCCTCCGCCACCGGTGGGTCGGCAACTTTTGCCACGTGGTCACTAAACTTGACATAGTCCCAAGAATCCTCTTCGCCCCTCTGGCCCCACTGGCCCCCCATCTCCACTCCCTCCTCCAGTACTGGCACCTATCGATGACTTCACCAAACCTGAGGGACCTCAGGGTCCCACCCCCGGAACAACTAAAGTCAGAGTTGTTCCATTTTGTATTAGACCATGTTGGAGAAAATGCCAGGGAAGGTGGTGGAGCTGCCAGGAGAGGTTCCGGTTTTTGGCCGTTTGGGAACTTTTTGTTTTGTAGTGACGATGGGGCGGTTTGTGTTGACAATGGGGTGGCTATTGTTAAGTTGTTGTATTTGATGCTGACAGTGGGTTGTCCTAGTTCTAGTGTTGAGGATCATATCAAGTATGGGGAGTATGTTGGGAAGGTTTCTATGCAATTCTTGAAGAGGAGTGGGTTTGGGGAAGGGGAGTTGCCTCAGTCGAGCTATGAAGCAGGGATCACTTTGGCATTGCAGTCCTCGGGAATATCTAGTCAGGAACGAGTTTCCGAACTAGCAAAAGATTGCCTAAAGATGGCAAAGCGAATGGGCCGCGCACCAAACCTCAATAGTGCAAACCTGGCTATCGGTTTATCAAAAATCAATCCACTCAGAGCCCAAATAGAGTGGTATAAAGCCTCATGTGAAGAATCGGAGGACCAAATGGGCTACTACGACTCCTTCAAGCAAAGGGGTGCATCAAGAAAAGGCTCAAAAGTAAACATGAACCGCATAAAGCTCGCTGTGTTTTGGGACGAATTAATCCATATGTTGGAAACCAACCAACTCCCACACGACTTTCACTACCGTGCAAAGTGGATCAACGCGTCCCAATTCTACAAACTTCTGGTCGAGCCATTGGACATAGCCGAGTATTATAGGAGTGGGGTCCACAGAAAGAAAGGACATTACATCACCCATGGTAGGGAGAGGAGGTACGAGATATTCGACAGGTGGTGGAGAGACAGACGAGTGACAGGGGAAGAGCATAATAAGAAGAGGAGCAAGTTTGCGAGCCTTACGCAAGACACATGCTTTTGGGCACATGTAGAGGAAGCTAGAGAGTGGTTAGAGAGCGTTAGGAGAGAGAGTGACCCGATTAAGCGGTCTCTGTTGTGGGAGAATATTGGTAAGTTTGAAGAATATGCAAGGAGAATGGTTGAAATGAAAGAGGTGTCTATAGATGTTTTGTTAAAAAATTCAAGCTATAGTTTGTGGGCAGAAGAATTGGGAGAATTAAAGTTGCAGCTCCAGCAATTCCCCCGGTTTCCGGGTTTTTTGGGTGGGGGAGTAACTCCTTAG

Network for GWHGAAZE025255

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0157

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01764.26	Lipase_3	6	89	1.80E-15
PF18117.2	EDS1_EP	285	491	2.60E-71

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006629	biological_process	lipid metabolic process

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.886
	SRR3591706	second leaf	10.508
	SRR3591707	mature leaf	47.052
	SRR3591708	Shoot apex	9.132
	SRR3591709	Stem	71.695
	SRR3591710	White floral bud	48.101
	SRR3591711	White flower	122.199
	SRR3591712	Green floral bud	26.874
	SRR3591713	Yellow flower	190.103
SRP173429	SRR8316895	Juvenile bud stage	15.668
	SRR8316896	Juvenile bud stage	27.638
	SRR8316897	Juvenile bud stage	13.425
	SRR8316894	Third green stage	8.079
	SRR8316900	Third green stage	22.762
	SRR8316901	Third green stage	25.548
	SRR8316898	Complete white stage	19.405
	SRR8316899	Complete white stage	38.137
	SRR8316903	Complete white stage	28.108
	SRR8316902	Silver flowering stage	40.570
	SRR8316904	Silver flowering stage	44.410
	SRR8316905	Silver flowering stage	26.001
	SRR8316906	Gold flowering stage	150.133
	SRR8316907	Gold flowering stage	128.927
	SRR8316908	Gold flowering stage	148.433
SRP132670	SRR6706286	Control	32.936
	SRR6706287	Light intensity 50%	33.238
	SRR6706288	Light intensity 20%	29.367
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	38.677
	CNS0095593	Slightly white alabastrum(diploid) 2	30.398
	CNS0095594	Slightly white alabastrum(diploid) 3	39.937
	CNS0095595	Whole white alabastrum(diploid) 2	27.313
	CNS0095596	Whole white alabastrum(diploid) 3	22.325
	CNS0095597	Whole white alabastrum(diploid) 4	22.835
	CNS0095598	Silvery flower (diploied) 1	54.120
	CNS0095599	Silvery flower (diploied) 2	52.356
	CNS0095600	Silvery flower (diploied) 3	88.257
	CNS0095601	Golden flower (diploid) 1	69.075
	CNS0095602	Golden flower (diploid) 2	144.243
	CNS0095603	Golden flower (diploid) 3	145.587
	CNS0095604	Slightly white alabastrum(tetraploid) 1	27.044
	CNS0095605	Slightly white alabastrum(tetraploid) 2	26.325
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.597
	CNS0095607	Whole white alabastrum(tetraploid) 1	26.574
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.169
	CNS0095609	Whole white alabastrum(tetraploid) 3	31.522
	CNS0095610	Silvery flower (tetraploid) 1	67.155
	CNS0095611	Silvery flower (tetraploid) 2	52.522
	CNS0095612	Silvery flower (tetraploid) 3	53.095
	CNS0095613	Golden flower (tetraploid) 1	67.794
	CNS0095614	Golden flower (tetraploid) 2	79.950
	CNS0095615	Golden flower (tetraploid) 3	45.691
CRA001975	CRR073297	Stem 1	18.867
	CRR073298	Stem 2	22.988
	CRR073299	Stem 3	20.083
	CRR073300	Leaf 1	26.039
	CRR073301	Leaf 2	27.936
	CRR073302	Leaf 3	21.957
	CRR073303	Juvenile bud 1	28.820
	CRR073304	Juvenile bud 2	35.699
	CRR073305	Juvenile bud 3	32.088
	CRR073306	Third green 1	38.607
	CRR073307	Third green 2	26.646
	CRR073308	Third green 3	37.623
	CRR073309	Second white 1	72.743
	CRR073310	Second white 2	61.402
	CRR073311	Second white 3	65.592
	CRR073312	Silver flowering 1	141.779
	CRR073313	Silver flowering 2	144.760
	CRR073314	Silver flowering 3	128.533
	CRR073315	Gold flowering 1	61.836
	CRR073316	Gold flowering 2	82.826
	CRR073317	Gold flowering 3	41.254
	CRR073318	Tawny withering 1	92.247
	CRR073319	Tawny withering 2	129.615
	CRR073320	Tawny withering 3	56.500