Gene detail

Detail information of GWHGAAZE025276

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006357146.1	0	PREDICTED: DNA repair protein UVH3-like isoform X2 [Solanum tuberosum]
COG	YP_001435280.1	1E-16	flap endonuclease-1
Swissprot	tr\|Q9ATY5\|UVH3_ARATH	5E-174	DNA repair protein UVH3
trEMBL	tr\|M1A9G7\|M1A9G7_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400017799}
TAIR10	AT3G28030.1	1E-160	5'-3' exonuclease family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	58904974	58916689	-
GWHAAZE00000007	mRNA	58904974	58916689	-
GWHAAZE00000007	exon	58916602	58916689	-
GWHAAZE00000007	exon	58916223	58916473	-
GWHAAZE00000007	exon	58915452	58915583	-
GWHAAZE00000007	exon	58914033	58914146	-
GWHAAZE00000007	exon	58913899	58913952	-
GWHAAZE00000007	exon	58913157	58913341	-
GWHAAZE00000007	exon	58911263	58913060	-
GWHAAZE00000007	exon	58909680	58909874	-
GWHAAZE00000007	exon	58909262	58909347	-
GWHAAZE00000007	exon	58908844	58909099	-
GWHAAZE00000007	exon	58908349	58908485	-
GWHAAZE00000007	exon	58907784	58907868	-
GWHAAZE00000007	exon	58907020	58907559	-
GWHAAZE00000007	exon	58904974	58905606	-
GWHAAZE00000007	CDS	58916602	58916689	-
GWHAAZE00000007	CDS	58916223	58916473	-
GWHAAZE00000007	CDS	58915452	58915583	-
GWHAAZE00000007	CDS	58914033	58914146	-
GWHAAZE00000007	CDS	58913899	58913952	-
GWHAAZE00000007	CDS	58913157	58913341	-
GWHAAZE00000007	CDS	58911263	58913060	-
GWHAAZE00000007	CDS	58909680	58909874	-
GWHAAZE00000007	CDS	58909262	58909347	-
GWHAAZE00000007	CDS	58908844	58909099	-
GWHAAZE00000007	CDS	58908349	58908485	-
GWHAAZE00000007	CDS	58907784	58907868	-
GWHAAZE00000007	CDS	58907020	58907559	-
GWHAAZE00000007	CDS	58904974	58905606	-

Transcript Sequence
>GWHTAAZE025310 ATGGGTGTTCACGGTCTCTGGGAACTTTTGGCACCAGTCGGCCGCCGCGTCTCAGTCGAAACCCTAGCCGGAAAAAAACTCGCAATAGATGCGAGCATATGGATGATACAATTCATGAAGGCTATGAGAGACGAGAAAGGAGAGATGGTGAGAAACGCTCACATATTGGGTTTTTTTCGCCGAATCTGCAAGCTACTCTTCCTCCGTACTAAGCCGGTTTTTGTATTTGACGGTGGCACTCCAGCTCTAAAGCGCCGAACTGTGATCGCTCGTCGCCGACAGAGGGAAAATGCGCAGGCCAAGATCCGCAAAACAGCGGAGAAATTGCTTCTTAATCACCTGAAGGAAATGAGGTTAAAAGAACTTGCTAAAGATCTTGAGAACCAGAGACAAATGAGTGACACTAAGGGCAAAACAATTATCACTGGTAAAAAATGCGATGCTGAAAATAATTCAGAAGGAGATGAAAAGCCAACAATGCATGGAAAAGTTGATCCTGCAGTATTAGCTGCTCTACCTCCATCGATGCAACTTGATCTTCTTGTTCAGGCAAGTGTACTTATATTCACGGTTGTGGCTTTGTTGATGAGAGAGAGATTGATGGCAGAAAACAGACAAAAGTATCAAAAGGTCAAGAAGGCCCCTGCAAGATTCTCTGAACTACAGATACAGGCTTATCTTAAAACCGTTGCTTTCCGTCGGGAGATAGGTGAAGTTCAGAAATCTGCTGCTGGGAGGGGAATAGGCGGCATACAGACTTCTCGTATAGCTTCTGAAGCTAACCGTGAATTTATTTTTTCATCATCTTTTACAGGGGATAAACAAACGCTTACATCTGCTGGATTAGAGAGAAACAGCAACAAGAAACATCAGGCACCAACGGGGCATCCTCCTTCAGATTCTCTTGGAGTGGTTGGACCGACCAACAGGCCCAACACTGTGACAGGATTGATGGTTGATGAGCCTAAAGAGGGATTTGACGATGACGTGGAGACATATCTGGATGAGAGGGGTCGTGTTCGAGTCAGTAGGCTGAGAGCTATGGGACTCAGAATGACTCGAGACTTACAAAGGAATTTGGATTTGATGAAAGAGAGTGAAGAGATAGTAGACACAAATAAAAATGTGAAACATATGCCCACCATTGATGAGAATGTAGTTAATGTCACAAGAAAATCGGTTTATAAAACCCAGTTTCTAAAGAATTCAGATCTGGGTGATGGAACTATGTACAACAAAAATGAAGAGTCTACATCTAGAAACAGAAGTTCCATAGAGGTGTCCTTTGAAGCTGTTGGTGAAGACGAATGTTTTGAGAGTGACGACGATCTATTTTCTCGTTTAGTGACTGGAGATCCAATATTGAGTACTTCTGCTGCTAATGATCTTTCAAAGAAACATTCTTCTGATTCTGCTTCAGATTGCGAATGGGAGGAAGGATCCATACCAGATAAAGATAATATCATTTCTCATGATCTTCAAGTAAGAAGCAAACCAGAGTCTACATCTAGAAACAGAAGCTCTATAGAGGTGTCTTTTAAAGCTGTTGGCGAAGACAAATGTTTTGGGAGTGACGATGATCTATTTTCTGGTTTAGTGACTGGAGATCCAATATTGAGTACTTCTGCTGATAATGATCTTTCAAAGAAACATTCTTCTAATTCTGCTTCGGATTGCGAATGGGAGGAAGGATCCATACCAGATAAAGAATATATCATTACTCATGATCTTAAAGTTGGAAGCAAACCAGATATTGTGGAACGCGGTGTTAACGACGATGGTGAAGTTGAATGGGAGGAAGGATCTTCTGATATTCCCCAACGTGCTTCCCCATCTCCTCCTGAATTCAATAAAACTATCTCCAAAGGTGTTCAGGAAGAAGAATTTGATTTCCAAGAAGCAATAAGGAGGAGTATTGAGGATTTAAGGTATCAGAAAGAAATTGATGTATCAACCAAAGATGTGAATTTCAAAAAAGATAGAGAAAAGGTTAACGAGGCTGCTTGTGTCGGTTCTGATCATCAAGGAAAAGATAGGGCTGAGCCAAAATTGTCATCACAGAATGTTCTTCAGACGAACAACTCGTCTTTTGGGAATATTACTACAAAGATCAGTGACCCTTCAGGCTCCTGGTTAGCTCCCTTGGTGGCAGTTAATCCTGATAAGAGGGAAATCCTGGTCGATAAACCAAATGAAAGCTACCCTGAACGTAAAACTGGAATAATGTTTTCACAGAGAAATTTTGTACATGTTGAACCAGTTACACCTACAGAAGCAGAGGGTGTTGACTTGATTAAAGAAAAGCCCGCGGGCACTTCACCGATGGTTGATGTCACTCATGCTGATACTCAACAATGTGGGTTTGAAAGTGGAGTGAATTACCATTCAACTGAGAAAACTGAAACTGTAGAATCTTTTGTGAAAGGATCAACAATTGACTTTGCCAATATACAAAAAAAATCCGAGGAAGTGCATAACGAAGAACAGATTGAACTTACGGAGTTTGGTTTGGAGGAGGAAATGCTAATCTTAGATAAAGAACGGATAGATCTAGGAGATGAACAGAGGAAGCATGAACGCAATGCAGAATCTGTAAGCAGTGAAATGTTTGCAGAATGCCAGGAGTTGCTTCAAATGTTTGGCTTACCATATATCATTGCGCCCATGGAAGCTGAAGCTCAATGTGCATACATGGAACTTACAAACCTTGTTGATGGTGTAGTTACTGACGACTCTGATGTGTTCTTGTTTGGGGCACGGAGTGTGCACAAAAATATATTTGATGATCGCAAATATGTTGAGACATATTTTATGAAGGACATTGAAAACGAGCTTGGTATAACCAGGGAAAAATTAATCCGCATGGCAATGCTTCTTGGGAGTGATTATACAGAAGGTATTAGCGGCATTGGCATTGTTAATGCTGTAGAAGTTGTAAATGCGTTTCCCGAGGAAGATGGTCTCCATAAATTCCGGGAGTGGATTGAATCACCAGATCCATCTATTCTCGGGAAGGCTGATTTGCAAGCTGGATCTCGTTCAAGGAAAAAAGGGTCAAAAGCCGCCGACATTGATGCGAGTTGCTCAAATAACAACAATGAAGGAGCTTCTTTCTTGGACAACATTGACAATGAGAAGCAGATTTTCATGGAGAAGCATAGAAATGTGAGCAAAAACTGGCACATTCCTTCAACCTTCCCAAGTGAAGCAGTTTTTTCAGCATATACTGCTCCACAAGTTGACAAGTCAACAGAGCCTTTTGCATGGGGAAAGCCAGATCAACGTGTTCTTCGCAAGTTGTGTTGGGAAAAGTTTGGATGGGGTACCCAGAAGGCTGATGAATTGCTAGTACCTGTTTTGAAGGAGTACAACAAACATGAGACTCAATTGCGCTTGGAAGCATTTTACACTTTCAATGAGAGGTTTGCAAAAATTCGAAGTAAGAGGATAAAAAAAGCTGTAAAAGGAATAACGGGGAACAAGTCCTTGGAATTAATGGATGATTCTGTGCAAGATGATTCTAAAAGTAGAAAGAAAGCAAAAGTAAGCCAGATTGCAGCTGGCAATGACTTACCTGGAGAACAATCGATTACAGCTGAGGCTGGTGTTGGTAAAGAGGAAACCAATTCCACAGAAAAATCAGCTTCAAAGCAGTCAAGAAAAAGGAGGAATCGTTTTCCATCTGAAGCGGGAAATTCAGAATCACCAATTAAGGCAGAAGGCAGGCAGAATACGAACAAAGGATCTATTGGAAAAGGCAGAGGAAGAGCAAGAGGACAATCTGTTGGAAGGGGGAGGATGAAACAGAATTCTGGTTTTGAAAATGCTGATACTAGTAACTCTGATGAGGGAAACAATTGTGATAGTAAGAAGCAAGAAGTGCAGGTTGAGAAGCATGAAGGGCCACATGAAGTACGACGGTCAGCACGTCATCGGAAGGCTGTGAAGTACACTTTAAATGACTTGGAAATTGATGATACAAGCAGATCCAGCCAAGATAATGGAAATTCTAGTGATAACGAGGGCATAGATGTTGGCGCTTCTTCGAGTCCGAGCAAAACAATTCATCTTATGGTTAAAGATCCTTCAAAGGAAGAGAGCTCAGCTTGTGTATACGTTGAAATTGAAGGGGCCGAAGCCGAAACTAGAATGGGTCTACTAGGTTCAGATCAATACGGTGAGGCAGAATTATCTCAAGACTACTTAAAAATGGGTGGTGGATTTTGCTTGGAAGGGGATGATGATAAAGATAAGGACCCCAGTGAATGTGCTTCTAGCCCAGCTAGAGCTATCATCTTCGAGAATCACAACACTTCCCATTATTCTGGCAACTTGGAAGATGCTGATCATGATATTGATGTGGGGCCCGCTCAATTAGTTTCTAGCACATTAAGAGCTTCGAATCCTGACTGTCCTAATGCTACTACTGACGAAAATATTTCGGGTGTAGCTATCTCTAAGGAAAATATTGAAGGAGATGGTTCTGGGACAAGGTCTATAAGATCTTTGAGTTTGAGTGCCATGCCTTACTTGAAAAGAAAGCGAAAGGGTTGA

Network for GWHGAAZE025276

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00752.18	XPG_N	1	97	4.20E-29
PF00867.19	XPG_I	879	962	6.30E-26

Protein Sequence

>GWHPAAZE025294
MGVHGLWELLAPVGRRVSVETLAGKKLAIDASIWMIQFMKAMRDEKGEMVRNAHILGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQRENAQAKIRKTAEKLLLNHLKEMRLKELAKDLENQRQMSDTKGKTIITGKKCDAENNSEGDEKPTMHGKVDPAVLAALPPSMQLDLLVQASVLIFTVVALLMRERLMAENRQKYQKVKKAPARFSELQIQAYLKTVAFRREIGEVQKSAAGRGIGGIQTSRIASEANREFIFSSSFTGDKQTLTSAGLERNSNKKHQAPTGHPPSDSLGVVGPTNRPNTVTGLMVDEPKEGFDDDVETYLDERGRVRVSRLRAMGLRMTRDLQRNLDLMKESEEIVDTNKNVKHMPTIDENVVNVTRKSVYKTQFLKNSDLGDGTMYNKNEESTSRNRSSIEVSFEAVGEDECFESDDDLFSRLVTGDPILSTSAANDLSKKHSSDSASDCEWEEGSIPDKDNIISHDLQVRSKPESTSRNRSSIEVSFKAVGEDKCFGSDDDLFSGLVTGDPILSTSADNDLSKKHSSNSASDCEWEEGSIPDKEYIITHDLKVGSKPDIVERGVNDDGEVEWEEGSSDIPQRASPSPPEFNKTISKGVQEEEFDFQEAIRRSIEDLRYQKEIDVSTKDVNFKKDREKVNEAACVGSDHQGKDRAEPKLSSQNVLQTNNSSFGNITTKISDPSGSWLAPLVAVNPDKREILVDKPNESYPERKTGIMFSQRNFVHVEPVTPTEAEGVDLIKEKPAGTSPMVDVTHADTQQCGFESGVNYHSTEKTETVESFVKGSTIDFANIQKKSEEVHNEEQIELTEFGLEEEMLILDKERIDLGDEQRKHERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELTNLVDGVVTDDSDVFLFGARSVHKNIFDDRKYVETYFMKDIENELGITREKLIRMAMLLGSDYTEGISGIGIVNAVEVVNAFPEEDGLHKFREWIESPDPSILGKADLQAGSRSRKKGSKAADIDASCSNNNNEGASFLDNIDNEKQIFMEKHRNVSKNWHIPSTFPSEAVFSAYTAPQVDKSTEPFAWGKPDQRVLRKLCWEKFGWGTQKADELLVPVLKEYNKHETQLRLEAFYTFNERFAKIRSKRIKKAVKGITGNKSLELMDDSVQDDSKSRKKAKVSQIAAGNDLPGEQSITAEAGVGKEETNSTEKSASKQSRKRRNRFPSEAGNSESPIKAEGRQNTNKGSIGKGRGRARGQSVGRGRMKQNSGFENADTSNSDEGNNCDSKKQEVQVEKHEGPHEVRRSARHRKAVKYTLNDLEIDDTSRSSQDNGNSSDNEGIDVGASSSPSKTIHLMVKDPSKEESSACVYVEIEGAEAETRMGLLGSDQYGEAELSQDYLKMGGGFCLEGDDDKDKDPSECASSPARAIIFENHNTSHYSGNLEDADHDIDVGPAQLVSSTLRASNPDCPNATTDENISGVAISKENIEGDGSGTRSIRSLSLSAMPYLKRKRKG

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10846	ERCC5, XPG, RAD2	Nucleotide excision repair	map03420

Gene Ontology

GO term	Ontology	Name
GO:0006281	biological_process	DNA repair
GO:0006289	biological_process	nucleotide-excision repair
GO:0005634	cellular_component	nucleus
GO:0004518	molecular_function	nuclease activity
GO:0016788	molecular_function	hydrolase activity, acting on ester bonds
GO:0003697	molecular_function	single-stranded DNA binding
GO:0004519	molecular_function	endonuclease activity
GO:0003677	molecular_function	DNA binding
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.366
	SRR3591706	second leaf	9.486
	SRR3591707	mature leaf	10.760
	SRR3591708	Shoot apex	15.057
	SRR3591709	Stem	16.344
	SRR3591710	White floral bud	14.929
	SRR3591711	White flower	19.009
	SRR3591712	Green floral bud	11.998
	SRR3591713	Yellow flower	18.012
SRP173429	SRR8316895	Juvenile bud stage	10.127
	SRR8316896	Juvenile bud stage	14.663
	SRR8316897	Juvenile bud stage	6.357
	SRR8316894	Third green stage	6.932
	SRR8316900	Third green stage	15.492
	SRR8316901	Third green stage	14.973
	SRR8316898	Complete white stage	5.189
	SRR8316899	Complete white stage	16.203
	SRR8316903	Complete white stage	16.440
	SRR8316902	Silver flowering stage	9.143
	SRR8316904	Silver flowering stage	17.204
	SRR8316905	Silver flowering stage	7.741
	SRR8316906	Gold flowering stage	20.924
	SRR8316907	Gold flowering stage	22.012
	SRR8316908	Gold flowering stage	22.624
SRP132670	SRR6706286	Control	14.059
	SRR6706287	Light intensity 50%	14.498
	SRR6706288	Light intensity 20%	13.459
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.721
	CNS0095593	Slightly white alabastrum(diploid) 2	9.603
	CNS0095594	Slightly white alabastrum(diploid) 3	9.530
	CNS0095595	Whole white alabastrum(diploid) 2	9.288
	CNS0095596	Whole white alabastrum(diploid) 3	8.153
	CNS0095597	Whole white alabastrum(diploid) 4	9.156
	CNS0095598	Silvery flower (diploied) 1	15.494
	CNS0095599	Silvery flower (diploied) 2	12.725
	CNS0095600	Silvery flower (diploied) 3	21.007
	CNS0095601	Golden flower (diploid) 1	13.578
	CNS0095602	Golden flower (diploid) 2	20.986
	CNS0095603	Golden flower (diploid) 3	19.480
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.352
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.301
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.389
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.171
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.293
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.953
	CNS0095610	Silvery flower (tetraploid) 1	26.459
	CNS0095611	Silvery flower (tetraploid) 2	18.657
	CNS0095612	Silvery flower (tetraploid) 3	27.624
	CNS0095613	Golden flower (tetraploid) 1	19.891
	CNS0095614	Golden flower (tetraploid) 2	24.236
	CNS0095615	Golden flower (tetraploid) 3	19.779
CRA001975	CRR073297	Stem 1	13.993
	CRR073298	Stem 2	10.955
	CRR073299	Stem 3	7.352
	CRR073300	Leaf 1	13.669
	CRR073301	Leaf 2	10.015
	CRR073302	Leaf 3	5.888
	CRR073303	Juvenile bud 1	7.491
	CRR073304	Juvenile bud 2	6.098
	CRR073305	Juvenile bud 3	6.520
	CRR073306	Third green 1	4.136
	CRR073307	Third green 2	4.062
	CRR073308	Third green 3	5.427
	CRR073309	Second white 1	2.489
	CRR073310	Second white 2	6.450
	CRR073311	Second white 3	5.818
	CRR073312	Silver flowering 1	3.021
	CRR073313	Silver flowering 2	2.069
	CRR073314	Silver flowering 3	4.451
	CRR073315	Gold flowering 1	1.798
	CRR073316	Gold flowering 2	3.645
	CRR073317	Gold flowering 3	0.534
	CRR073318	Tawny withering 1	6.608
	CRR073319	Tawny withering 2	5.756
	CRR073320	Tawny withering 3	5.468