Detail information of GWHGAAZE025279


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002324007.24.015E-164hypothetical protein POPTR_0017s10860g [Populus trichocarpa]
Swissprottr|Q9FL07|ATL46_ARATH5E-136RING-H2 finger protein ATL46
trEMBLtr|F6HV15|F6HV15_VITVI3E-165Putative uncharacterized protein {ECO:0000313|EMBL:CCB58533.1}
TAIR10AT5G40250.13E-89RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene5896028958961290+
GWHAAZE00000007mRNA5896028958961290+
GWHAAZE00000007exon5896028958961075+
GWHAAZE00000007exon5896112458961290+
GWHAAZE00000007CDS5896028958961075+
GWHAAZE00000007CDS5896112458961290+
Transcript Sequence

Network for GWHGAAZE025279

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_21101532.00E-12
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf16.673
SRR3591706second leaf6.331
SRR3591707mature leaf4.988
SRR3591708Shoot apex19.658
SRR3591709Stem22.377
SRR3591710White floral bud9.010
SRR3591711White flower7.862
SRR3591712Green floral bud12.916
SRR3591713Yellow flower1.664
SRP173429 SRR8316895Juvenile bud stage 15.493
SRR8316896Juvenile bud stage 23.426
SRR8316897Juvenile bud stage 6.180
SRR8316894Third green stage 5.028
SRR8316900Third green stage 10.881
SRR8316901Third green stage 11.320
SRR8316898Complete white stage 3.122
SRR8316899Complete white stage 12.647
SRR8316903Complete white stage 4.687
SRR8316902Silver flowering stage2.330
SRR8316904Silver flowering stage2.980
SRR8316905Silver flowering stage1.835
SRR8316906Gold flowering stage 3.995
SRR8316907Gold flowering stage 2.592
SRR8316908Gold flowering stage 3.972
SRP132670SRR6706286Control3.939
SRR6706287Light intensity 50%3.591
SRR6706288Light intensity 20%3.970
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.308
CNS0095593Slightly white alabastrum(diploid) 210.477
CNS0095594Slightly white alabastrum(diploid) 316.977
CNS0095595Whole white alabastrum(diploid) 28.110
CNS0095596Whole white alabastrum(diploid) 39.230
CNS0095597Whole white alabastrum(diploid) 47.707
CNS0095598Silvery flower (diploied) 114.176
CNS0095599Silvery flower (diploied) 211.147
CNS0095600Silvery flower (diploied) 36.350
CNS0095601Golden flower (diploid) 110.224
CNS0095602Golden flower (diploid) 28.968
CNS0095603Golden flower (diploid) 37.238
CNS0095604Slightly white alabastrum(tetraploid) 111.860
CNS0095605Slightly white alabastrum(tetraploid) 211.709
CNS0095606Slightly white alabastrum(tetraploid) 315.131
CNS0095607Whole white alabastrum(tetraploid) 15.513
CNS0095608Whole white alabastrum(tetraploid) 24.481
CNS0095609Whole white alabastrum(tetraploid) 310.949
CNS0095610Silvery flower (tetraploid) 14.705
CNS0095611Silvery flower (tetraploid) 24.787
CNS0095612Silvery flower (tetraploid) 310.674
CNS0095613Golden flower (tetraploid) 12.974
CNS0095614Golden flower (tetraploid) 23.620
CNS0095615Golden flower (tetraploid) 31.974
CRA001975CRR073297Stem 17.189
CRR073298Stem 26.183
CRR073299Stem 34.568
CRR073300Leaf 13.396
CRR073301Leaf 24.033
CRR073302Leaf 32.559
CRR073303Juvenile bud 13.142
CRR073304Juvenile bud 22.938
CRR073305Juvenile bud 33.887
CRR073306Third green 13.878
CRR073307Third green 22.870
CRR073308Third green 33.355
CRR073309Second white 16.948
CRR073310Second white 26.056
CRR073311Second white 36.237
CRR073312Silver flowering 13.406
CRR073313Silver flowering 22.571
CRR073314Silver flowering 31.578
CRR073315Gold flowering 12.075
CRR073316Gold flowering 22.729
CRR073317Gold flowering 35.020
CRR073318Tawny withering 16.181
CRR073319Tawny withering 24.690
CRR073320Tawny withering 37.538