Detail information of GWHGAAZE025286


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008353474.18.59063E-31PREDICTED: methyl-CpG-binding domain-containing protein 9-like [Malus domestica]
Swissprottr|Q9SGH2|MBD9_ARATH8E-23Methyl-CpG-binding domain-containing protein 9
trEMBLtr|A0A0A0LHX5|A0A0A0LHX5_CUCSA2E-29Uncharacterized protein {ECO:0000313|EMBL:KGN59651.1}
TAIR10AT3G01460.11E-14methyl-CPG-binding domain 9

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene5908470659085328+
GWHAAZE00000007mRNA5908470659085328+
GWHAAZE00000007exon5908470659085190+
GWHAAZE00000007exon5908531359085328+
GWHAAZE00000007CDS5908470659085190+
GWHAAZE00000007CDS5908531359085328+
Transcript Sequence

Network for GWHGAAZE025286

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.699
SRR3591706second leaf2.669
SRR3591707mature leaf4.702
SRR3591708Shoot apex3.421
SRR3591709Stem5.493
SRR3591710White floral bud3.988
SRR3591711White flower6.022
SRR3591712Green floral bud8.379
SRR3591713Yellow flower2.293
SRP173429 SRR8316895Juvenile bud stage 3.739
SRR8316896Juvenile bud stage 6.604
SRR8316897Juvenile bud stage 4.684
SRR8316894Third green stage 3.237
SRR8316900Third green stage 7.478
SRR8316901Third green stage 5.676
SRR8316898Complete white stage 0.619
SRR8316899Complete white stage 3.401
SRR8316903Complete white stage 3.225
SRR8316902Silver flowering stage2.070
SRR8316904Silver flowering stage3.012
SRR8316905Silver flowering stage1.843
SRR8316906Gold flowering stage 3.270
SRR8316907Gold flowering stage 3.184
SRR8316908Gold flowering stage 2.227
SRP132670SRR6706286Control10.333
SRR6706287Light intensity 50%10.621
SRR6706288Light intensity 20%12.332
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.609
CNS0095593Slightly white alabastrum(diploid) 21.538
CNS0095594Slightly white alabastrum(diploid) 31.698
CNS0095595Whole white alabastrum(diploid) 22.774
CNS0095596Whole white alabastrum(diploid) 31.043
CNS0095597Whole white alabastrum(diploid) 42.049
CNS0095598Silvery flower (diploied) 11.572
CNS0095599Silvery flower (diploied) 21.481
CNS0095600Silvery flower (diploied) 34.781
CNS0095601Golden flower (diploid) 11.904
CNS0095602Golden flower (diploid) 26.368
CNS0095603Golden flower (diploid) 36.735
CNS0095604Slightly white alabastrum(tetraploid) 13.976
CNS0095605Slightly white alabastrum(tetraploid) 23.316
CNS0095606Slightly white alabastrum(tetraploid) 35.213
CNS0095607Whole white alabastrum(tetraploid) 13.365
CNS0095608Whole white alabastrum(tetraploid) 23.764
CNS0095609Whole white alabastrum(tetraploid) 35.625
CNS0095610Silvery flower (tetraploid) 14.626
CNS0095611Silvery flower (tetraploid) 26.447
CNS0095612Silvery flower (tetraploid) 33.028
CNS0095613Golden flower (tetraploid) 10.745
CNS0095614Golden flower (tetraploid) 22.941
CNS0095615Golden flower (tetraploid) 34.537
CRA001975CRR073297Stem 17.110
CRR073298Stem 26.940
CRR073299Stem 34.582
CRR073300Leaf 17.079
CRR073301Leaf 25.203
CRR073302Leaf 33.752
CRR073303Juvenile bud 11.335
CRR073304Juvenile bud 21.638
CRR073305Juvenile bud 33.032
CRR073306Third green 10.934
CRR073307Third green 20.822
CRR073308Third green 31.296
CRR073309Second white 12.137
CRR073310Second white 21.749
CRR073311Second white 31.653
CRR073312Silver flowering 10.892
CRR073313Silver flowering 21.322
CRR073314Silver flowering 30.579
CRR073315Gold flowering 10.562
CRR073316Gold flowering 21.739
CRR073317Gold flowering 31.251
CRR073318Tawny withering 11.448
CRR073319Tawny withering 21.812
CRR073320Tawny withering 31.622