Gene detail

Detail information of GWHGAAZE025287

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006470355.1	PREDICTED: methyl-CpG-binding domain-containing protein 9-like isoform X1 [Citrus sinensis]
Swissprot	tr\|Q9SGH2\|MBD9_ARATH	Methyl-CpG-binding domain-containing protein 9
trEMBL	tr\|A0A061ED66\|A0A061ED66_THECC	Methyl-CpG-binding domain-containing protein 9, putative isoform 1 {ECO:0000313\|EMBL:EOY02357.1}
TAIR10	AT3G01460.1	methyl-CPG-binding domain 9

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	59091567	59103084	+
GWHAAZE00000007	mRNA	59091567	59103084	+
GWHAAZE00000007	exon	59091567	59091695	+
GWHAAZE00000007	exon	59091863	59092510	+
GWHAAZE00000007	exon	59093379	59094416	+
GWHAAZE00000007	exon	59094762	59095385	+
GWHAAZE00000007	exon	59096038	59096346	+
GWHAAZE00000007	exon	59097138	59097473	+
GWHAAZE00000007	exon	59097603	59097701	+
GWHAAZE00000007	exon	59098384	59098815	+
GWHAAZE00000007	exon	59100415	59102277	+
GWHAAZE00000007	exon	59102606	59102673	+
GWHAAZE00000007	exon	59102787	59103084	+
GWHAAZE00000007	CDS	59091567	59091695	+
GWHAAZE00000007	CDS	59091863	59092510	+
GWHAAZE00000007	CDS	59093379	59094416	+
GWHAAZE00000007	CDS	59094762	59095385	+
GWHAAZE00000007	CDS	59096038	59096346	+
GWHAAZE00000007	CDS	59097138	59097473	+
GWHAAZE00000007	CDS	59097603	59097701	+
GWHAAZE00000007	CDS	59098384	59098815	+
GWHAAZE00000007	CDS	59100415	59102277	+
GWHAAZE00000007	CDS	59102606	59102673	+
GWHAAZE00000007	CDS	59102787	59103084	+

Transcript Sequence
>GWHTAAZE025321 ATGCTAGGTACTGTTGGTGGACATCTTGTACTCATCTTTTGGTTATTAAAAAAATTCCGTTTCTTATCCAAAAAAAAGCCGGTTGAGGCCCTTGTGTGTAATCACAAATATGAATCCTATGCCTTTCGGATAATTACTTGTACATTTATTGTGGTTTTTAGAAAGAGAACCCCAGGTGATAATTCATTTGATGTCCCAGTGGCATATTCGAAGTTGTTGCATGCTGGGAACGGGCGTGAGTTTCAAAAAGCATCTGGTGTTGTGTTAAGCTCTGTCAAATTTGGTTTTGAAGATATATTGAGACATAAGCAGACTGTGCATAGAATTTTTGAGGAGGTTGATTCGCACTCCGTGCCCAAAGGGTTTGGAAGTAATAATTGTACAGCTATTGAATTACCCAACCAGTACCCAGTCAAAATGTATTTGCAGGCCCTTCGAGAATATATTCTCGACAGGCATGGAGTACTAGAGGAAGGTTGGCATGTGGAATTCAAACAATCAATTGCCAGTGGTGAACTACGTGTAGTTTACTGTGCTCCAGATGGCAAGACATTTGAATCAATGGCCGAAGTTGCCTCATATCTTGGGTTGATATCTAATGGCGATACTGTGCGTCCCGCAATAAGAAGCCATGCACCTGCATCACCACAACAATTCCCCACTAGAAGGAACTATGGATCTGGTACTGAGCAGTGTATTGGTAAATCTGGTAATTACGTGAAAGTCACTGAAGCTGGGCTGGAAGACAGAGGTGGAAGCGAGTCTCGGCAACTTAATGATGGACTTCCAGTTCAATATGAAGATTTCTTTGTTCTTTCCGTTGGCAAGATTGTTTCAAAATCATCTTATCATAATGTAAACCAGATCTGGCCCATAGGCTATCGATCTTGTTGGCACGATAAGATTACCGGTTCACTTTTCATGTCCGAAGTGTCCAATGGTGGCGAATTTGGACCAGTTTTCAAAGTCACAAGGCGTTCTTGCTGTGCAGTGCCTATTCCGGATAGTTCAACTGTGCTCTGTAGGCCATACGTTCTCAAACCTGATCGCCAAAACGAAGAAAACCACGATGGTAATGATACAGATTACAATGGGGATTCGAGTGTTCTTATGTTCCTTTCAGAGCCTTCACCACCTGGAGAAAATGATATTCTATCTTGCCTCCATTCTAGCGAATGTCTTATTGCACAGCCTTCAAATAGCTTTCAGCTTGAAGGAAGTGAAAGATATGGAAATCTTTTACCCCATAATTTGGATTTGAAGGATGAAATTGGCGAGTTTTCAATTGAAGGTTCTTCCTCATCTTCAGCATGGAGCATGGTATCCAAAACCCTAATTCATGCTTGCAGGAAAATTTATATGCAGACAGGCACTATCAAGTTCTTCTGCAAGCATGTTTCAGATGGGACATGCTCATCTGAGGTGGATGAAAACGACAAAGAGAAGTTCGATTCTCTGGCCAAATTTTGTGGTACATCAGACTCTGTGAAAATCCCTTCTGCTGTACGGAGTTACAGAGAGCTTGAGACGTTGACTGAAGTACTGACCAAGTGGGTGTATCAGGATAGATTTGGATTGGATGTTGAATTTGTGCAAGAAATTGTAGAACAGCTTCCCGGTGCCCGGGATTGTTCAAATTACGTATTTTTGAAGGAAAGAACTTCATATTCTTCATCCTTGATTGTTGGGAATGGGAACCTAAAGGTTAAAGCAAAGGATACAGTTGAAGACCCTGTGGTCAATGACCATTGTCCTCCACCTGGGAATCCTATGAGCTCTAGGGTTCCTCATCAGCTTGTCGGTGATGTTCTTCAGATATGGGAGTTTCTGCAGCGTTTCTATAACATTTTGGATTTTAAAGAGCATTTGTCAATTGAAGAACTCGAAAAGGAACTTGTCACTCCATGCTTTAATGGTTTGGATCAACACATAAATTCACACAGAATTGATGGTACAAGCGATCGTGTATTATTCTCAAGCAGTGAATTGGGTCCACTGAAGTCAGCGGAAAATCCCAATGTATTTATACAAATGGGAAAGGAAGCAACAAAGGAAGCAGAGCAAAATCCCCATTCTTTGACCAGGGTTCACAATTCTCTTGTGAGAGCACTATTCAGTGAGCTGCAATCCAAGGTGGCTGCGGTTACAGATCCAAAACTTGATAGTGGAGAGTTAAAATCAAAACGGGGCCGTAAAAGGGATACAGATTGTTGGGTTACTGCAAAAAGAACCAACCTCAATACGCCTCCATTTAATGAACTGACTTGGCCAGAATTGGTTCGGAGGTACATTGTGGCTGTCCTATCAATGGACGGTAACCATGATTCTGCAGAGGTAATTCTCCGTGAAAGAGCAAAAGTGTTCCGCTGTTTACAAGGTGATGGTGGGGTGCTCTGTGGCTCTCTGACTGGAGTTGCTGGAATGGAAGCAGATGCACAGTTACTTGCAGAGGCTACCAAAAAGGTTTTTGGTTCTATGAACAAGCAGAATGATATTTTGTTTGTAGATGATGAAGAATCGGATGGAACTAGTTCTAGCGAGAAGCTCACAGTAAACGATGACAGTGATGTTCCCGAATGGGCTAAAGTGCTGGAACCTGTCAGAAAGCTGCCCACAAATGTGGGGGCCAGAATTAGGAGGTGTGTTAATGAAGCTTTGGAGAAAGATCCACCAGAATGGGCCAAGAAAATCTTAGAGCGTTCCATCAGTAAGGAAGTTTACAAGGGAAATGCATCTGGGCCCACCAAGAAAGCTGTTCTTTCAGTGCTAGCAAATGTGAATGCTGAAGGTTTGCAGCATAAACCTGAGAAGGTAATAAAGAAAATGAAGTCCATATCCATATCTGATATTATTACGAAACAATGTCGAATCGTATTACGCCGAGCTGCTTCTGCTGATGAGGGAAAAAATTTCTGCAACCTGCTGGGAAGGAAGTTGATGAATTGTAGCGATAATGATGATGAGGGAATACTTGGATCTCCAGCAATGGTTTCTCGTCCGCTGGATTTTAGGACAATTGATCTGAGATTGGCAGTTGGAGTCTACAGCGGATCACATGAAGCTTTTCTTGAGGATGTTAGAGAGTTTTGGACTAATGTGACTACTGCTTATGGGGATCAACCTGATTCGGTTCAGTTAGCCCAGACATTATCCAACAACTTTGAATCTTTATATGAAAAGGAGGTTGTTACTGTTTTCCACAAATTAGAGGGGTATACAAAATTAGAATCCTTAAGTGCGGAGTCCAAGAAAGAAATAGAGGAAATCCTTATTTCTGCAAGTGAAATTCCAAAAGCCCCTTGGGAAGAAGGAGTATGCAAAGTGTGCGGCATTGATAGAGACGATGATAGTGTTCTACTATGTGATACATGCGATGCGGAGTACCATACCTACTGCTTGAATCCACCACTTGCTAGGATACCTGAAGGAAACTGGTACTGTCCTTCCTGTGTATCTGGTAAGAACTTAGTCCAAGATGCCTCTGAGGGTACAAAGGTCATTAGCCGACGCCAAAAGAAAATAGGGGGAGAGATCACTCGTATGTACTTGGACTCGCTTGCACATTTAGCAACTGGAATGGAAGAAAGAGAGTATTGGGAGTTGAGTGTTGAGGAGAGAACTTTCCTGCTTAAGTTTCTGTGCGACGAGTTGTTGAACTCTACTCTTATTCGTCAACATCTTGAGCAGTCTGCAGAAGCTTCTGCTGATTTGCAGCAGAAATTACGATCTCTCTATGTCGAATGGAAAACCTTGAAGTTCAAAGAAGAAAAACTGGCTCTCAAAGCTGTGAAAGTGGAAAAATGCTCTCTCAAGTCAGTTGGACATGTTATGGGAGAAACCTCTGCTAATGCACTAACAAACAGTGACAAATGTATTGAACAACTGAATACTCTTGTTGATAAAGGTGACTCAATGAATCTTGATCAGCAAGATATCAATGAATTGGAAAGAGGAAATGGTTTACAGGTCGACATGGACAAGTGTATTATGGGGAGTGATGCTAAAACTCCGCTTTCTTCCTTGGACCCACAAGAACAATCCGCTTCATTGGATAATTCTTCGATGGATGTGAACAAATGTCAATTGGATGATATAAACTCCGTCAAGAATGAGATTTTTCTTCTGCAGAAATCAATTACCTGTACAGAAACAGAGCTTATGAAGTTATCCGCTCGAAGAGAATTTCTGGGTCGTGATTCCTTTGGCAGATTGTACTGGATCTTACCAGAGTCCAATAGCAATGTGGAATTTCTGCAGAGGGGAAAGATTGTATGTTATAGTGATGATAATCCCATATCCTCTACGTGGGTTTTTTACCAATCTGATGCAGAAATTAAAGAACTAGTTTACTGTTTGAAAGAAAATGACCCAAGGGAGAGAGAATTGAAAGAGTCCATTTTGCATTGGCAAAAACTAGGGTTTCAAGGTGCTCAACAAACTGAAAACCGAAACAGGAAGGACCCTGAAACGGTTGTAGCTAGGTTTACAAACCTTACAAATTCCTTAGAATCTTGTTATAGTCTTATTACCAAGGCAGCCAGTTTACTGGAGACTAAATATGGCCTGTTTTTTCAAACGCAAGCAACCGACTCTTCGAAGAAGTGGAGTAGAAAGTCGAAGATAACGACCGAACAGAAAATGTATAGGTGTGAATGCTTAGAACCTGTTTGGCAATCGAGAAATCACTGCGTTTCTTGCCACAAAACCTTCTTCACTAATGTGGAACTTGAGAAACATAATGACGGCAAGTGCAATTTAGTTCCACCTACTTCTGAGAGAAACAAAGAGGATAGTGATGCAGTGAAGGGGAAAGGGCCTAAAGGTGAAACCAACACTGTAGATGGTTTGAAAAGTGGGTGTATTAGATTTCAAAACAATAGATTACCATGCCCCTTCGATTTTGAAGAAATCTGCTCCAAATTTGTGATCAAAAGTTCCAATAAAGAATTGGTGAAAGAAATAGGTCTTCTCAGCTCAAATGGGATTCCATCGTTTGTTTCATCTGTATCTCCTTATCTCAGTGATCCTTCACTAATGCTTGTTCCTCCCCAAGAAAATTTTGGTGTTCCGAAAGAAAATCTTGGTTCTTCTGCGGGGAACAATGTGACAACTGTTGATTTGAATGATGGTAGTGTTGCTGATAGTTCTTCAAATTCTGCTTTTAAAGAACCCTGTGCAGCACAAAAAGGCAATAAAGCTGAGGGGAAAAATGATAAAATTTTGAATTCGGTAATGGAGGTGAACTGCTGTGTTGTTCCTGAGGCTTCACTAAGGCCATTGGTAGGCAAAGCTTCAAATATTTTAAGGCAGCTCAAGATAAATTTGCTTGATATGGATGCGGTGCTTACTGAAGAAGCTATAAAGCCTTCGAAGGCAAATTCAGAAAGGAGGCGGGCTTGGTGCGAATTTGTTAAATCTGCAGAAACGATCTATGAGGTTAGGCTTCATTTCCATGATTTTTCTTTCTTGATAGTTGTTGGATGGCTAAATGTGAACATTGAAAACAAAACTGTAATACTAGATTCTATATCACCATTGCTTCTACTATGGTTCAAAGTGTTAATCGTGTTCGAAGATGCGATTAGAAGCGAGTACTTAACAAATGCATGGTGGTACTGGTCCTCACTCTCGGCAGCTGCTAAAATATCCACCTTGTCTGCTCTTGCTCTGCGTATATACTCGTTAGACAATTCCATCAACTATGAGAAGATTTCTTCCAATAACGCCCCTCCTAATAAACCGAGTGCCAAAGCAGACCAAAACCCACAAGCTAGTTCAGATTCATCAGAAAAGTCTAAACCGTCCTGCAAACCAAACAAGAAACGTAAGGAACCCGAAACTTGA

Network for GWHGAAZE025287

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01429.20	MBD	152	219	1.30E-09
PF05964.15	FYRN	269	296	0.00018
PF05965.15	FYRC	522	549	0.00018
PF00628.30	PHD	1105	1151	8.00E-12
PF15612.7	WHIM1	1185	1228	2.10E-14
PF15613.7	WSD	1392	1470	2.60E-06

Protein Sequence

>GWHPAAZE025305
MLGTVGGHLVLIFWLLKKFRFLSKKKPVEALVCNHKYESYAFRIITCTFIVVFRKRTPGDNSFDVPVAYSKLLHAGNGREFQKASGVVLSSVKFGFEDILRHKQTVHRIFEEVDSHSVPKGFGSNNCTAIELPNQYPVKMYLQALREYILDRHGVLEEGWHVEFKQSIASGELRVVYCAPDGKTFESMAEVASYLGLISNGDTVRPAIRSHAPASPQQFPTRRNYGSGTEQCIGKSGNYVKVTEAGLEDRGGSESRQLNDGLPVQYEDFFVLSVGKIVSKSSYHNVNQIWPIGYRSCWHDKITGSLFMSEVSNGGEFGPVFKVTRRSCCAVPIPDSSTVLCRPYVLKPDRQNEENHDGNDTDYNGDSSVLMFLSEPSPPGENDILSCLHSSECLIAQPSNSFQLEGSERYGNLLPHNLDLKDEIGEFSIEGSSSSSAWSMVSKTLIHACRKIYMQTGTIKFFCKHVSDGTCSSEVDENDKEKFDSLAKFCGTSDSVKIPSAVRSYRELETLTEVLTKWVYQDRFGLDVEFVQEIVEQLPGARDCSNYVFLKERTSYSSSLIVGNGNLKVKAKDTVEDPVVNDHCPPPGNPMSSRVPHQLVGDVLQIWEFLQRFYNILDFKEHLSIEELEKELVTPCFNGLDQHINSHRIDGTSDRVLFSSSELGPLKSAENPNVFIQMGKEATKEAEQNPHSLTRVHNSLVRALFSELQSKVAAVTDPKLDSGELKSKRGRKRDTDCWVTAKRTNLNTPPFNELTWPELVRRYIVAVLSMDGNHDSAEVILRERAKVFRCLQGDGGVLCGSLTGVAGMEADAQLLAEATKKVFGSMNKQNDILFVDDEESDGTSSSEKLTVNDDSDVPEWAKVLEPVRKLPTNVGARIRRCVNEALEKDPPEWAKKILERSISKEVYKGNASGPTKKAVLSVLANVNAEGLQHKPEKVIKKMKSISISDIITKQCRIVLRRAASADEGKNFCNLLGRKLMNCSDNDDEGILGSPAMVSRPLDFRTIDLRLAVGVYSGSHEAFLEDVREFWTNVTTAYGDQPDSVQLAQTLSNNFESLYEKEVVTVFHKLEGYTKLESLSAESKKEIEEILISASEIPKAPWEEGVCKVCGIDRDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCVSGKNLVQDASEGTKVISRRQKKIGGEITRMYLDSLAHLATGMEEREYWELSVEERTFLLKFLCDELLNSTLIRQHLEQSAEASADLQQKLRSLYVEWKTLKFKEEKLALKAVKVEKCSLKSVGHVMGETSANALTNSDKCIEQLNTLVDKGDSMNLDQQDINELERGNGLQVDMDKCIMGSDAKTPLSSLDPQEQSASLDNSSMDVNKCQLDDINSVKNEIFLLQKSITCTETELMKLSARREFLGRDSFGRLYWILPESNSNVEFLQRGKIVCYSDDNPISSTWVFYQSDAEIKELVYCLKENDPRERELKESILHWQKLGFQGAQQTENRNRKDPETVVARFTNLTNSLESCYSLITKAASLLETKYGLFFQTQATDSSKKWSRKSKITTEQKMYRCECLEPVWQSRNHCVSCHKTFFTNVELEKHNDGKCNLVPPTSERNKEDSDAVKGKGPKGETNTVDGLKSGCIRFQNNRLPCPFDFEEICSKFVIKSSNKELVKEIGLLSSNGIPSFVSSVSPYLSDPSLMLVPPQENFGVPKENLGSSAGNNVTTVDLNDGSVADSSSNSAFKEPCAAQKGNKAEGKNDKILNSVMEVNCCVVPEASLRPLVGKASNILRQLKINLLDMDAVLTEEAIKPSKANSERRRAWCEFVKSAETIYEVRLHFHDFSFLIVVGWLNVNIENKTVILDSISPLLLLWFKVLIVFEDAIRSEYLTNAWWYWSSLSAAAKISTLSALALRIYSLDNSINYEKISSNNAPPNKPSAKADQNPQASSDSSEKSKPSCKPNKKRKEPET

Gene family

Gene family	subfamily
Transcription Factors Family	PHD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.796
	SRR3591706	second leaf	4.956
	SRR3591707	mature leaf	6.714
	SRR3591708	Shoot apex	5.576
	SRR3591709	Stem	6.589
	SRR3591710	White floral bud	4.646
	SRR3591711	White flower	7.169
	SRR3591712	Green floral bud	8.744
	SRR3591713	Yellow flower	5.185
SRP173429	SRR8316895	Juvenile bud stage	4.247
	SRR8316896	Juvenile bud stage	7.494
	SRR8316897	Juvenile bud stage	4.400
	SRR8316894	Third green stage	3.621
	SRR8316900	Third green stage	7.873
	SRR8316901	Third green stage	8.259
	SRR8316898	Complete white stage	1.235
	SRR8316899	Complete white stage	3.979
	SRR8316903	Complete white stage	2.648
	SRR8316902	Silver flowering stage	1.721
	SRR8316904	Silver flowering stage	3.684
	SRR8316905	Silver flowering stage	1.152
	SRR8316906	Gold flowering stage	3.966
	SRR8316907	Gold flowering stage	3.854
	SRR8316908	Gold flowering stage	3.950
SRP132670	SRR6706286	Control	3.045
	SRR6706287	Light intensity 50%	3.669
	SRR6706288	Light intensity 20%	3.578
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.477
	CNS0095593	Slightly white alabastrum(diploid) 2	5.431
	CNS0095594	Slightly white alabastrum(diploid) 3	6.711
	CNS0095595	Whole white alabastrum(diploid) 2	7.835
	CNS0095596	Whole white alabastrum(diploid) 3	8.069
	CNS0095597	Whole white alabastrum(diploid) 4	7.041
	CNS0095598	Silvery flower (diploied) 1	3.537
	CNS0095599	Silvery flower (diploied) 2	3.620
	CNS0095600	Silvery flower (diploied) 3	6.860
	CNS0095601	Golden flower (diploid) 1	3.731
	CNS0095602	Golden flower (diploid) 2	7.622
	CNS0095603	Golden flower (diploid) 3	7.527
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.498
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.848
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.974
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.730
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.670
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.850
	CNS0095610	Silvery flower (tetraploid) 1	6.242
	CNS0095611	Silvery flower (tetraploid) 2	6.076
	CNS0095612	Silvery flower (tetraploid) 3	3.935
	CNS0095613	Golden flower (tetraploid) 1	2.345
	CNS0095614	Golden flower (tetraploid) 2	5.782
	CNS0095615	Golden flower (tetraploid) 3	3.402
CRA001975	CRR073297	Stem 1	5.617
	CRR073298	Stem 2	5.021
	CRR073299	Stem 3	2.913
	CRR073300	Leaf 1	5.651
	CRR073301	Leaf 2	5.330
	CRR073302	Leaf 3	2.633
	CRR073303	Juvenile bud 1	3.365
	CRR073304	Juvenile bud 2	1.627
	CRR073305	Juvenile bud 3	2.881
	CRR073306	Third green 1	1.212
	CRR073307	Third green 2	0.983
	CRR073308	Third green 3	1.605
	CRR073309	Second white 1	0.781
	CRR073310	Second white 2	1.378
	CRR073311	Second white 3	1.634
	CRR073312	Silver flowering 1	0.948
	CRR073313	Silver flowering 2	0.779
	CRR073314	Silver flowering 3	0.948
	CRR073315	Gold flowering 1	1.394
	CRR073316	Gold flowering 2	3.194
	CRR073317	Gold flowering 3	1.003
	CRR073318	Tawny withering 1	2.928
	CRR073319	Tawny withering 2	2.650
	CRR073320	Tawny withering 3	2.370