Gene detail

Detail information of GWHGAAZE025288

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002278872.1	1.6614E-101	PREDICTED: homeobox-leucine zipper protein HAT5 [Vitis vinifera]
Swissprot	tr\|Q02283\|HAT5_ARATH	3E-72	Homeobox-leucine zipper protein HAT5
trEMBL	tr\|F6HV02\|F6HV02_VITVI	6E-102	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58520.1}
TAIR10	AT3G01470.1	9E-60	homeobox 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	59105628	59109008	-
GWHAAZE00000007	mRNA	59105628	59109008	-
GWHAAZE00000007	exon	59105628	59106038	-
GWHAAZE00000007	exon	59106712	59106769	-
GWHAAZE00000007	exon	59107594	59107781	-
GWHAAZE00000007	exon	59108487	59108620	-
GWHAAZE00000007	exon	59108927	59109008	-
GWHAAZE00000007	CDS	59108927	59109008	-
GWHAAZE00000007	CDS	59108487	59108620	-
GWHAAZE00000007	CDS	59107594	59107781	-
GWHAAZE00000007	CDS	59106712	59106769	-
GWHAAZE00000007	CDS	59105628	59106038	-

Transcript Sequence
>GWHTAAZE025322 ATGGATTCCGGCCGTCTTGTCTTCGATCCATCCTCCCATGGCAACATGTTGTTCCTCGGGAATGCTGATCCCCTTTTTAGAGGACCTAGATCAGTACCGAACATGGAGGAATCGTCGAGGAGGCGACCTTTTTTCACCTCGCCAGAGGAACTGTTCGACGATGAATACTACGACGAACAGACGCCCGAGAAGAAGCGCCGGCTCTCACCGGAGCAGGTGCTCATGTTGGAGAAGAGCTTTGAGGTAGAGAATAAGCTGGAGCCGGAGAGGAAGAGCCAGCTGGCGAAGAAGCTAGGGCTGCAGCCGAGGCAGGTGGCGGTGTGGTTCCAGAACCGCCGTGCACGGTGGAAGACAAAGCAGCTAGAGAGGGACTATGATCAACTAAAATCCTCTTATGATTCCCTGCACCTCCCTGAAGTGGGTCCTACTCCTACCTATAAGATTCCACCTTACCCTCAATATGTTGTTTCCTTAGCCGAGAAAGTGAACTCAAAAGAGGTGACCAGAGCATTGGTGCTGGAGCAGAAATCCGACCCGCCTCCAGTGGATGCAGAACAAGTTCCATCCCTTCAATTAAATGTGAAGGTGGAGGACCGGCTTAGCACGGGGAGCGGTGGAAGTGCAGTGGTGGATGAAGATGGCCCACACCTTGTGGACAGCGGTGATTCGTACTTTCCGACAATGAGTATCCTCGCTGTGTCGCTCCGATTGATGGGATCCACTCGGAGGAGGACGATGGCAGTGACGATGGCCGTAGTTACTTTTCCGAAGTGTTTGTGGCTGCGGAACCGCAGCAACACCACCACCACCACCACCAAGAGGAGGAGGAGCCAATGGGCTGGTGGGTTTGGTCTTAGAAGTTATGTATTTTGA

Network for GWHGAAZE025288

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00046.30	Homeodomain	64	117	4.80E-18
PF02183.19	HALZ	119	136	6.50E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-HD-ZIP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	239.655
	SRR3591706	second leaf	120.850
	SRR3591707	mature leaf	558.341
	SRR3591708	Shoot apex	98.648
	SRR3591709	Stem	632.205
	SRR3591710	White floral bud	95.906
	SRR3591711	White flower	87.717
	SRR3591712	Green floral bud	85.246
	SRR3591713	Yellow flower	33.460
SRP173429	SRR8316895	Juvenile bud stage	26.757
	SRR8316896	Juvenile bud stage	38.639
	SRR8316897	Juvenile bud stage	15.840
	SRR8316894	Third green stage	22.203
	SRR8316900	Third green stage	72.412
	SRR8316901	Third green stage	71.949
	SRR8316898	Complete white stage	51.769
	SRR8316899	Complete white stage	354.643
	SRR8316903	Complete white stage	70.500
	SRR8316902	Silver flowering stage	12.669
	SRR8316904	Silver flowering stage	10.303
	SRR8316905	Silver flowering stage	7.314
	SRR8316906	Gold flowering stage	13.925
	SRR8316907	Gold flowering stage	19.828
	SRR8316908	Gold flowering stage	28.754
SRP132670	SRR6706286	Control	88.533
	SRR6706287	Light intensity 50%	83.731
	SRR6706288	Light intensity 20%	82.247
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	82.156
	CNS0095593	Slightly white alabastrum(diploid) 2	101.000
	CNS0095594	Slightly white alabastrum(diploid) 3	103.166
	CNS0095595	Whole white alabastrum(diploid) 2	72.492
	CNS0095596	Whole white alabastrum(diploid) 3	51.895
	CNS0095597	Whole white alabastrum(diploid) 4	79.015
	CNS0095598	Silvery flower (diploied) 1	93.718
	CNS0095599	Silvery flower (diploied) 2	79.693
	CNS0095600	Silvery flower (diploied) 3	59.431
	CNS0095601	Golden flower (diploid) 1	80.895
	CNS0095602	Golden flower (diploid) 2	62.716
	CNS0095603	Golden flower (diploid) 3	56.286
	CNS0095604	Slightly white alabastrum(tetraploid) 1	64.086
	CNS0095605	Slightly white alabastrum(tetraploid) 2	58.801
	CNS0095606	Slightly white alabastrum(tetraploid) 3	85.517
	CNS0095607	Whole white alabastrum(tetraploid) 1	78.289
	CNS0095608	Whole white alabastrum(tetraploid) 2	57.109
	CNS0095609	Whole white alabastrum(tetraploid) 3	32.107
	CNS0095610	Silvery flower (tetraploid) 1	45.452
	CNS0095611	Silvery flower (tetraploid) 2	36.506
	CNS0095612	Silvery flower (tetraploid) 3	22.541
	CNS0095613	Golden flower (tetraploid) 1	51.765
	CNS0095614	Golden flower (tetraploid) 2	29.432
	CNS0095615	Golden flower (tetraploid) 3	18.478
CRA001975	CRR073297	Stem 1	39.910
	CRR073298	Stem 2	41.232
	CRR073299	Stem 3	54.825
	CRR073300	Leaf 1	76.743
	CRR073301	Leaf 2	84.607
	CRR073302	Leaf 3	69.327
	CRR073303	Juvenile bud 1	115.022
	CRR073304	Juvenile bud 2	54.690
	CRR073305	Juvenile bud 3	143.602
	CRR073306	Third green 1	11.462
	CRR073307	Third green 2	23.292
	CRR073308	Third green 3	15.228
	CRR073309	Second white 1	4.623
	CRR073310	Second white 2	5.630
	CRR073311	Second white 3	5.344
	CRR073312	Silver flowering 1	5.929
	CRR073313	Silver flowering 2	2.808
	CRR073314	Silver flowering 3	6.415
	CRR073315	Gold flowering 1	225.112
	CRR073316	Gold flowering 2	210.095
	CRR073317	Gold flowering 3	162.117
	CRR073318	Tawny withering 1	344.776
	CRR073319	Tawny withering 2	378.324
	CRR073320	Tawny withering 3	397.895