Detail information of GWHGAAZE025294


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008787955.10PREDICTED: formate dehydrogenase, mitochondrial [Phoenix dactylifera]
COGYP_001939975.18E-110formate dehydrogenase
Swissprottr|Q07511|FDH_SOLTU0Formate dehydrogenase, mitochondrial (Precursor)
trEMBLtr|D7TWQ4|D7TWQ4_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI34929.3}
TAIR10AT5G14780.12E-156formate dehydrogenase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene5916185059164644-
GWHAAZE00000007mRNA5916185059164644-
GWHAAZE00000007exon5916447359164644-
GWHAAZE00000007exon5916359859163616-
GWHAAZE00000007exon5916304459163526-
GWHAAZE00000007exon5916237359162497-
GWHAAZE00000007exon5916205459162166-
GWHAAZE00000007exon5916185059161963-
GWHAAZE00000007CDS5916447359164644-
GWHAAZE00000007CDS5916359859163616-
GWHAAZE00000007CDS5916304459163526-
GWHAAZE00000007CDS5916237359162497-
GWHAAZE00000007CDS5916205459162166-
GWHAAZE00000007CDS5916185059161963-
Transcript Sequence

Network for GWHGAAZE025294

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00389.312-Hacid_dh683234.80E-12
PF02826.202-Hacid_dh_C1192975.60E-51
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K00122FDH Metabolic pathways map01100
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Glyoxylate and dicarboxylate metabolismmap00630
Methane metabolismmap00680

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0051287molecular_functionNAD binding
GO:0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0008863molecular_functionformate dehydrogenase (NAD+) activity

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE025294.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30100200300400500600700800900100011001200130014001…1500Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf241.384
SRR3591706second leaf110.007
SRR3591707mature leaf142.211
SRR3591708Shoot apex91.410
SRR3591709Stem241.663
SRR3591710White floral bud826.744
SRR3591711White flower921.620
SRR3591712Green floral bud383.183
SRR3591713Yellow flower897.615
SRP173429 SRR8316895Juvenile bud stage 153.144
SRR8316896Juvenile bud stage 211.336
SRR8316897Juvenile bud stage 93.311
SRR8316894Third green stage 94.598
SRR8316900Third green stage 273.392
SRR8316901Third green stage 291.013
SRR8316898Complete white stage 311.409
SRR8316899Complete white stage 471.428
SRR8316903Complete white stage 442.934
SRR8316902Silver flowering stage435.871
SRR8316904Silver flowering stage404.916
SRR8316905Silver flowering stage164.862
SRR8316906Gold flowering stage 481.749
SRR8316907Gold flowering stage 920.063
SRR8316908Gold flowering stage 759.406
SRP132670SRR6706286Control317.280
SRR6706287Light intensity 50%324.390
SRR6706288Light intensity 20%330.692
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1199.200
CNS0095593Slightly white alabastrum(diploid) 2221.267
CNS0095594Slightly white alabastrum(diploid) 3197.063
CNS0095595Whole white alabastrum(diploid) 2180.340
CNS0095596Whole white alabastrum(diploid) 3163.404
CNS0095597Whole white alabastrum(diploid) 4171.579
CNS0095598Silvery flower (diploied) 1392.387
CNS0095599Silvery flower (diploied) 2367.031
CNS0095600Silvery flower (diploied) 3847.156
CNS0095601Golden flower (diploid) 1389.436
CNS0095602Golden flower (diploid) 2691.281
CNS0095603Golden flower (diploid) 3678.174
CNS0095604Slightly white alabastrum(tetraploid) 1243.473
CNS0095605Slightly white alabastrum(tetraploid) 2213.124
CNS0095606Slightly white alabastrum(tetraploid) 3382.037
CNS0095607Whole white alabastrum(tetraploid) 1161.206
CNS0095608Whole white alabastrum(tetraploid) 2120.033
CNS0095609Whole white alabastrum(tetraploid) 3217.005
CNS0095610Silvery flower (tetraploid) 11356.633
CNS0095611Silvery flower (tetraploid) 2671.611
CNS0095612Silvery flower (tetraploid) 3497.316
CNS0095613Golden flower (tetraploid) 1717.023
CNS0095614Golden flower (tetraploid) 21005.907
CNS0095615Golden flower (tetraploid) 3375.566
CRA001975CRR073297Stem 1219.636
CRR073298Stem 2218.389
CRR073299Stem 3264.439
CRR073300Leaf 1256.289
CRR073301Leaf 2220.402
CRR073302Leaf 3251.598
CRR073303Juvenile bud 1309.298
CRR073304Juvenile bud 2446.266
CRR073305Juvenile bud 3391.997
CRR073306Third green 1116.764
CRR073307Third green 2123.462
CRR073308Third green 3123.554
CRR073309Second white 1279.085
CRR073310Second white 2122.460
CRR073311Second white 3106.405
CRR073312Silver flowering 1170.662
CRR073313Silver flowering 2234.783
CRR073314Silver flowering 3251.037
CRR073315Gold flowering 167.351
CRR073316Gold flowering 266.512
CRR073317Gold flowering 366.266
CRR073318Tawny withering 1132.139
CRR073319Tawny withering 2100.443
CRR073320Tawny withering 3113.912