Gene detail

Detail information of GWHGAAZE025300

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ABI14813.1	6.4647E-146	chloroplast carbonic anhydrase [Pachysandra terminalis]
COG	YP_004846678.1	2E-48	carbonate dehydratase
Swissprot	tr\|P27140\|BCA1_ARATH	3E-143	Beta carbonic anhydrase 1, chloroplastic {ECO:0000303\|PubMed:17407539} (Precursor)
trEMBL	tr\|A1XX45\|A1XX45_9MAGN	2E-146	Carbonic anhydrase {ECO:0000256\|RuleBase:RU003956}
TAIR10	AT3G01500.3	7E-93	carbonic anhydrase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	59243592	59246927	-
GWHAAZE00000007	mRNA	59243592	59246927	-
GWHAAZE00000007	exon	59243592	59243756	-
GWHAAZE00000007	exon	59244003	59244108	-
GWHAAZE00000007	exon	59244580	59244665	-
GWHAAZE00000007	exon	59245278	59245331	-
GWHAAZE00000007	exon	59245711	59245827	-
GWHAAZE00000007	exon	59246049	59246097	-
GWHAAZE00000007	exon	59246230	59246388	-
GWHAAZE00000007	exon	59246842	59246927	-
GWHAAZE00000007	CDS	59246842	59246927	-
GWHAAZE00000007	CDS	59246230	59246388	-
GWHAAZE00000007	CDS	59246049	59246097	-
GWHAAZE00000007	CDS	59245711	59245827	-
GWHAAZE00000007	CDS	59245278	59245331	-
GWHAAZE00000007	CDS	59244580	59244665	-
GWHAAZE00000007	CDS	59244003	59244108	-
GWHAAZE00000007	CDS	59243592	59243756	-

Transcript Sequence
>GWHTAAZE025334 ATGAGGGTAGGAAATGTATTGCAGAGAGAAGATATGGCGAATGAATCGTACGAGAAGGCCATTGAAGGACTCAAGAAGCTTCTCAGTGAGAAGGGGGAGTTGGGAACTGTTGCCGCAGAAAAAGTAAATAAAATCACAGCTGAACTTCAAACAGCTGACACTACTACTACTACTAACGGCAAAGCCTCCAAGTCGGTCGAGACCCTGAAAACTGGCTTCATTAAGTTCAAAAAGGACAAATACGAAACAAATCCAACCTTACACAGTGAACTTGCTAAAGGCCAGAGCCCAAAGTTCATGGTATTTGCTTGTTCCGACTCTCGTGTCTGCCCATCCCATGTGTTGGATTTTCAACCAGGTGACGCTTTTGTAGTTCGTAATGTTGCCAACATGGTACCTCCATTTGATCAGATCAAATATGCTGGGGTGGGGGCTGCTGTTGAATATGCTGTACTGCATCTCAAGGTGGAGGAAATTGTGGTTATTGGCCACAGCGCTTGTGGTGGGATAAAGGGTCTCATGACTTTCCCAGATGAGGGACCCAACACCACTGCATTTATAGAAGATTGGGTTCGAATTGGTTTACCTGCCAAGTCTAAGGTTAAATCCGAATATGGAAATGCCTCTCTACCAGAACAATGTGGTTATTGTGAGAAGGAAGCGGTGAATGTATCGCTCGGGAATTTGCTGACCTACCCATTTGTGAGAGAGGGATTGTTGAAGAAAACTCTTGCACTGAAGGGTGGTTACTATGATTTCATTAATGGATCGTTTGAGCTTTGGGGACTTGAGTTCGGCATATCACCTTCTCTCTCCGTATGA

Network for GWHGAAZE025300

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00484.20	Pro_CA	100	257	1.20E-40

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01673	cynT, can	Metabolic pathways	map01100
K01673	cynT, can	Nitrogen metabolism	map00910

Gene Ontology

GO term	Ontology	Name
GO:0015976	biological_process	carbon utilization
GO:0004089	molecular_function	carbonate dehydratase activity
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	173.690
	SRR3591706	second leaf	6200.605
	SRR3591707	mature leaf	6974.118
	SRR3591708	Shoot apex	463.849
	SRR3591709	Stem	351.940
	SRR3591710	White floral bud	10.553
	SRR3591711	White flower	6.368
	SRR3591712	Green floral bud	30.444
	SRR3591713	Yellow flower	0.630
SRP173429	SRR8316895	Juvenile bud stage	48.168
	SRR8316896	Juvenile bud stage	22.598
	SRR8316897	Juvenile bud stage	27.563
	SRR8316894	Third green stage	8.401
	SRR8316900	Third green stage	18.555
	SRR8316901	Third green stage	16.505
	SRR8316898	Complete white stage	4.707
	SRR8316899	Complete white stage	20.550
	SRR8316903	Complete white stage	5.340
	SRR8316902	Silver flowering stage	2.057
	SRR8316904	Silver flowering stage	2.324
	SRR8316905	Silver flowering stage	0.940
	SRR8316906	Gold flowering stage	2.517
	SRR8316907	Gold flowering stage	0.211
	SRR8316908	Gold flowering stage	1.497
SRP132670	SRR6706286	Control	13.184
	SRR6706287	Light intensity 50%	20.476
	SRR6706288	Light intensity 20%	25.932
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.934
	CNS0095593	Slightly white alabastrum(diploid) 2	11.186
	CNS0095594	Slightly white alabastrum(diploid) 3	16.974
	CNS0095595	Whole white alabastrum(diploid) 2	14.651
	CNS0095596	Whole white alabastrum(diploid) 3	11.464
	CNS0095597	Whole white alabastrum(diploid) 4	12.973
	CNS0095598	Silvery flower (diploied) 1	11.134
	CNS0095599	Silvery flower (diploied) 2	5.239
	CNS0095600	Silvery flower (diploied) 3	4.229
	CNS0095601	Golden flower (diploid) 1	7.854
	CNS0095602	Golden flower (diploid) 2	8.743
	CNS0095603	Golden flower (diploid) 3	7.803
	CNS0095604	Slightly white alabastrum(tetraploid) 1	33.558
	CNS0095605	Slightly white alabastrum(tetraploid) 2	34.946
	CNS0095606	Slightly white alabastrum(tetraploid) 3	76.437
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.873
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.256
	CNS0095609	Whole white alabastrum(tetraploid) 3	52.272
	CNS0095610	Silvery flower (tetraploid) 1	7.622
	CNS0095611	Silvery flower (tetraploid) 2	6.320
	CNS0095612	Silvery flower (tetraploid) 3	5.822
	CNS0095613	Golden flower (tetraploid) 1	1.297
	CNS0095614	Golden flower (tetraploid) 2	5.240
	CNS0095615	Golden flower (tetraploid) 3	0.788
CRA001975	CRR073297	Stem 1	105.233
	CRR073298	Stem 2	61.688
	CRR073299	Stem 3	153.924
	CRR073300	Leaf 1	18.826
	CRR073301	Leaf 2	17.516
	CRR073302	Leaf 3	30.506
	CRR073303	Juvenile bud 1	57.892
	CRR073304	Juvenile bud 2	31.096
	CRR073305	Juvenile bud 3	52.600
	CRR073306	Third green 1	7.477
	CRR073307	Third green 2	2.939
	CRR073308	Third green 3	6.139
	CRR073309	Second white 1	1.325
	CRR073310	Second white 2	0.446
	CRR073311	Second white 3	0.479
	CRR073312	Silver flowering 1	0.288
	CRR073313	Silver flowering 2	0.764
	CRR073314	Silver flowering 3	1.679
	CRR073315	Gold flowering 1	2725.050
	CRR073316	Gold flowering 2	2827.798
	CRR073317	Gold flowering 3	2721.595
	CRR073318	Tawny withering 1	1.114
	CRR073319	Tawny withering 2	14.428
	CRR073320	Tawny withering 3	2.239