Gene detail

Detail information of GWHGAAZE025308

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02096.1	5.04553E-89	unnamed protein product [Coffea canephora]
Swissprot	tr\|P81391\|MYB05_ANTMA	1E-84	Myb-related protein 305
trEMBL	tr\|A0A068U0Q2\|A0A068U0Q2_COFCA	2E-89	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02096.1}
TAIR10	AT3G27810.1	1E-57	myb domain protein 21

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	59369555	59371587	-
GWHAAZE00000007	mRNA	59369555	59371587	-
GWHAAZE00000007	exon	59371449	59371587	-
GWHAAZE00000007	exon	59371189	59371318	-
GWHAAZE00000007	exon	59369555	59369934	-
GWHAAZE00000007	CDS	59371449	59371587	-
GWHAAZE00000007	CDS	59371189	59371318	-
GWHAAZE00000007	CDS	59369619	59369934	-
GWHAAZE00000007	three_prime_UTR	59369555	59369618	-

Transcript Sequence
>GWHTAAZE025342 ATGGACAAAAAGCCACAAGAGTACTCCATAGAAGTTGAAGTGAGGAAAGGACCATGGACTATGGAAGAAGACTTGATCCTAATTAACTACATAGCGAATCATGGTGAAGGTTTATGGAATGCCGTCGCTATATCAACTGGTCTCAAACGTACCGGAAAAAGCTGTCGGCTTCGGTGGCTTAATTACCTACGGCCGGACGTGAGGAGGGGTAATATTACACCGGAAGAAAACCTTTTAATCATGGAGCTTCATGCCAAGTGGGGAAACAGATGGTCGAAAATTGCAAAGCAACTACCAGGAAGAACGGACAATGAAATAAAGAACTACTGGAGGACCAGAATTCAAAAGCATATTAAGCAAGAAGAGAAATTGAGGGAGCAATTTGGTAATTCTGAGCCTAACAATGAAGCAAACTCAAGCCAAATTGGTGCTATAAATGGCATTGATGAAACCTACTCTCCACATTCGATTTTCCCGGGAAATTTGGAAGCTTATCAAAGTCCTAATTTCCACTTTGAATCAAATGAGAGTATTTGGAGCATGGAGGATCTTGGTCTATGCAATTACTTAATGGGAACTAATTAAATTTTGCAAAATCTAGTTGGGAAATTGCTACATATGTATTTAATTTTCCTATATAATTGGCCAC

Network for GWHGAAZE025308

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0132

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	16	63	2.70E-14
PF00249.32	Myb_DNA-binding	69	112	1.10E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.290
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.217
	SRR3591709	Stem	0.916
	SRR3591710	White floral bud	289.208
	SRR3591711	White flower	15.272
	SRR3591712	Green floral bud	303.879
	SRR3591713	Yellow flower	6.572
SRP173429	SRR8316895	Juvenile bud stage	0.213
	SRR8316896	Juvenile bud stage	2.425
	SRR8316897	Juvenile bud stage	0.310
	SRR8316894	Third green stage	1.995
	SRR8316900	Third green stage	19.456
	SRR8316901	Third green stage	30.236
	SRR8316898	Complete white stage	144.872
	SRR8316899	Complete white stage	179.730
	SRR8316903	Complete white stage	183.837
	SRR8316902	Silver flowering stage	5.395
	SRR8316904	Silver flowering stage	38.930
	SRR8316905	Silver flowering stage	5.110
	SRR8316906	Gold flowering stage	2.140
	SRR8316907	Gold flowering stage	2.333
	SRR8316908	Gold flowering stage	10.111
SRP132670	SRR6706286	Control	46.688
	SRR6706287	Light intensity 50%	46.277
	SRR6706288	Light intensity 20%	25.985
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.131
	CNS0095593	Slightly white alabastrum(diploid) 2	4.658
	CNS0095594	Slightly white alabastrum(diploid) 3	5.242
	CNS0095595	Whole white alabastrum(diploid) 2	7.092
	CNS0095596	Whole white alabastrum(diploid) 3	15.077
	CNS0095597	Whole white alabastrum(diploid) 4	10.539
	CNS0095598	Silvery flower (diploied) 1	2.965
	CNS0095599	Silvery flower (diploied) 2	3.862
	CNS0095600	Silvery flower (diploied) 3	2.375
	CNS0095601	Golden flower (diploid) 1	0.549
	CNS0095602	Golden flower (diploid) 2	0.834
	CNS0095603	Golden flower (diploid) 3	0.617
	CNS0095604	Slightly white alabastrum(tetraploid) 1	26.425
	CNS0095605	Slightly white alabastrum(tetraploid) 2	32.931
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.966
	CNS0095607	Whole white alabastrum(tetraploid) 1	32.281
	CNS0095608	Whole white alabastrum(tetraploid) 2	38.048
	CNS0095609	Whole white alabastrum(tetraploid) 3	92.559
	CNS0095610	Silvery flower (tetraploid) 1	16.673
	CNS0095611	Silvery flower (tetraploid) 2	7.833
	CNS0095612	Silvery flower (tetraploid) 3	26.514
	CNS0095613	Golden flower (tetraploid) 1	0.960
	CNS0095614	Golden flower (tetraploid) 2	36.857
	CNS0095615	Golden flower (tetraploid) 3	9.628
CRA001975	CRR073297	Stem 1	2.938
	CRR073298	Stem 2	10.724
	CRR073299	Stem 3	1.747
	CRR073300	Leaf 1	12.437
	CRR073301	Leaf 2	11.799
	CRR073302	Leaf 3	25.120
	CRR073303	Juvenile bud 1	24.676
	CRR073304	Juvenile bud 2	755.050
	CRR073305	Juvenile bud 3	17.434
	CRR073306	Third green 1	19.065
	CRR073307	Third green 2	27.033
	CRR073308	Third green 3	42.244
	CRR073309	Second white 1	1.087
	CRR073310	Second white 2	6.395
	CRR073311	Second white 3	0.342
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.104
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.099
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.004
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000