Gene detail

Detail information of GWHGAAZE025311

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008230581.1	0	PREDICTED: polygalacturonase At1g48100 [Prunus mume]
COG	YP_003391696.1	1E-29	glycoside hydrolase family 28
Swissprot	tr\|Q949Z1\|PGLR4_ARATH	2E-126	Polygalacturonase At1g48100 (Precursor)
trEMBL	tr\|F6HHV8\|F6HHV8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51795.1}
TAIR10	AT1G60590.1	1E-156	Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	59402405	59406500	-
GWHAAZE00000007	mRNA	59402405	59406500	-
GWHAAZE00000007	exon	59406231	59406500	-
GWHAAZE00000007	exon	59405567	59405698	-
GWHAAZE00000007	exon	59405262	59405492	-
GWHAAZE00000007	exon	59404310	59404354	-
GWHAAZE00000007	exon	59404033	59404240	-
GWHAAZE00000007	exon	59403502	59403692	-
GWHAAZE00000007	exon	59402405	59402794	-
GWHAAZE00000007	CDS	59406231	59406500	-
GWHAAZE00000007	CDS	59405567	59405698	-
GWHAAZE00000007	CDS	59405262	59405492	-
GWHAAZE00000007	CDS	59404310	59404354	-
GWHAAZE00000007	CDS	59404033	59404240	-
GWHAAZE00000007	CDS	59403502	59403692	-
GWHAAZE00000007	CDS	59402405	59402794	-

Transcript Sequence
>GWHTAAZE025345 ATGAGAAGGTTTAACCTAAATAATCCAACACTCATCACTCTCATTGCATTGCTTGTCTGGTCTTCAGACCAAAACACCTGTAATGCCAGACAAGGCAATATTCAATGGAGACAAAACATAGCTACATCATCATTCCTCTCCTACAAGAATGGAGACGCCAGTCACTACCTGGTCCACCACCGTGCCACGAGGTTGATGCAAGAGACCACAACCACATTTAATGTATTGAACTATGGTGCGAAAGGCAACGGAGCTACTGATGACACTAAGGCATTTGAAGCAGCATGGACAGACGCATGTAAAGTGCAGGCATCGACAATGGTGGTCCCATCAGGGTCATTGTTTCTAGTCAACCCTATCTCGTTCTCAGGACCTAATTGTGAATCAAACATTGTATTTCAGTTGGATGGTAAGATTATTGCTCCAACTGGCGCGGCAGCATGGGGATCGGGTCTCTTGCAGTGGATCGAATTTACAAAGCTTAAAGGGATTACAATCCAAGGCAAAGGTATCATTGACGGGCAAGGCTCTGTATGGTGGAACGACTTGCCTACAGATAATCCAGCAATAGAAGCAGAATTGGTTGATGCTACTCCAGCCAGAAATTCAAATTATAGCAGTTCACAAGATTTGGCAAGTAGTGAGGTCAGTGGAAAAATGCCGAGCACCAAGCCAACGGCACTAAGGTTCTATGGGAGCACTGGCGTGACAGTAAAGGGCATAACAATTCAAAACAGCCCTCAGGCTCACCTGAAATTTGATGACTGCACATCCGTTCAAGTTTCTGATGTGACCATTTCATCCCCAGGAGACAGCCCCAATACAGATGGAATCCACCTGCAGAACTCCCAAGATGTGGTGATACACAGCAGCAATCTTGCCTGTGGAGATGACTGTGTCTCCATACAGACGGGATGTTCCGGTATTTACATATACAGTGTGAAATGTGGACCCGGACATGGAATCAGCATCGGGGGACTTGGAAAAGACGGCACTAAAGCCTGCGTTTCAAATGTTACTGTTCGAGACACTACAATGACCAACACAATGAATGGTGTAAGAATAAAGACATGGCAGGGTGGCTCAGGGTCAGTGCAAGGGGTCATGTTCTCAAACATTCAAGTTTCCGCAGTTGAAACTCCGATAAAAATCGACCAATATTATTGTGATGGAAGCAAATGCCAGAACAAGTCATCAGCTGTCTCTGTATCGGGCATAAACTATCAGAATATAAAAGGAACCTATACATTAAAACCTGTTCAATTTGCATGCAGCGACAGCTTGCCCTGCACAGGTGTGACTTTAACCACCATAGAACTAAAACCGCTGCAAGAAAAAAACCAATTAGAAGAACCCTTTTGCTGGAAAACTTATGGAGAACTGCGAACAAGTACCACACCCCCAATTGATTGTTTGCTGACGGGCAAGCCATCAAACCAAGTTCACAGCAATTATGATTCATGCTGA

Network for GWHGAAZE025311

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00295.18	Glyco_hydro_28	102	185	1.50E-10
PF00295.18	Glyco_hydro_28	221	442	3.10E-68

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01184	E3.2.1.15	Metabolic pathways	map01100
K01184	E3.2.1.15	Pentose and glucuronate interconversions	map00040

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004650	molecular_function	polygalacturonase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.418
	SRR3591706	second leaf	0.483
	SRR3591707	mature leaf	0.871
	SRR3591708	Shoot apex	0.212
	SRR3591709	Stem	0.454
	SRR3591710	White floral bud	0.322
	SRR3591711	White flower	0.877
	SRR3591712	Green floral bud	0.270
	SRR3591713	Yellow flower	0.813
SRP173429	SRR8316895	Juvenile bud stage	0.252
	SRR8316896	Juvenile bud stage	0.697
	SRR8316897	Juvenile bud stage	0.706
	SRR8316894	Third green stage	0.281
	SRR8316900	Third green stage	0.521
	SRR8316901	Third green stage	0.332
	SRR8316898	Complete white stage	0.091
	SRR8316899	Complete white stage	0.414
	SRR8316903	Complete white stage	0.532
	SRR8316902	Silver flowering stage	0.212
	SRR8316904	Silver flowering stage	0.283
	SRR8316905	Silver flowering stage	0.350
	SRR8316906	Gold flowering stage	0.339
	SRR8316907	Gold flowering stage	0.303
	SRR8316908	Gold flowering stage	1.092
SRP132670	SRR6706286	Control	0.466
	SRR6706287	Light intensity 50%	0.614
	SRR6706288	Light intensity 20%	0.762
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.705
	CNS0095593	Slightly white alabastrum(diploid) 2	0.465
	CNS0095594	Slightly white alabastrum(diploid) 3	0.985
	CNS0095595	Whole white alabastrum(diploid) 2	0.312
	CNS0095596	Whole white alabastrum(diploid) 3	0.185
	CNS0095597	Whole white alabastrum(diploid) 4	0.103
	CNS0095598	Silvery flower (diploied) 1	0.485
	CNS0095599	Silvery flower (diploied) 2	0.294
	CNS0095600	Silvery flower (diploied) 3	0.122
	CNS0095601	Golden flower (diploid) 1	1.677
	CNS0095602	Golden flower (diploid) 2	0.841
	CNS0095603	Golden flower (diploid) 3	0.662
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.134
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.272
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.196
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.003
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.294
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.116
	CNS0095610	Silvery flower (tetraploid) 1	0.262
	CNS0095611	Silvery flower (tetraploid) 2	0.388
	CNS0095612	Silvery flower (tetraploid) 3	0.046
	CNS0095613	Golden flower (tetraploid) 1	0.141
	CNS0095614	Golden flower (tetraploid) 2	0.285
	CNS0095615	Golden flower (tetraploid) 3	0.301
CRA001975	CRR073297	Stem 1	0.142
	CRR073298	Stem 2	0.542
	CRR073299	Stem 3	0.097
	CRR073300	Leaf 1	0.415
	CRR073301	Leaf 2	0.305
	CRR073302	Leaf 3	0.063
	CRR073303	Juvenile bud 1	0.018
	CRR073304	Juvenile bud 2	0.034
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.060
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.145
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.024
	CRR073315	Gold flowering 1	0.720
	CRR073316	Gold flowering 2	0.536
	CRR073317	Gold flowering 3	0.624
	CRR073318	Tawny withering 1	1.999
	CRR073319	Tawny withering 2	0.902
	CRR073320	Tawny withering 3	0.284