Detail information of GWHGAAZE025320


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDP45313.10hypothetical protein JCGZ_09562 [Jatropha curcas]
COGYP_006254636.10isocitrate dehydrogenase
Swissprottr|Q8LPJ5|ICDHP_ARATH0Isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial (Precursor)
trEMBLtr|A0A067LDM2|A0A067LDM2_JATCU0Isocitrate dehydrogenase [NADP] {ECO:0000256|PIRNR:PIRNR000108}
TAIR10AT5G14590.10Isocitrate/isopropylmalate dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene5954703559555839-
GWHAAZE00000007mRNA5954703559555839-
GWHAAZE00000007exon5955554359555839-
GWHAAZE00000007exon5955503459555143-
GWHAAZE00000007exon5955281959552856-
GWHAAZE00000007exon5955217359552250-
GWHAAZE00000007exon5955186459551917-
GWHAAZE00000007exon5955148759551540-
GWHAAZE00000007exon5955131359551414-
GWHAAZE00000007exon5955106959551157-
GWHAAZE00000007exon5955088059550983-
GWHAAZE00000007exon5955070059550768-
GWHAAZE00000007exon5955049359550608-
GWHAAZE00000007exon5955031359550347-
GWHAAZE00000007exon5955006859550210-
GWHAAZE00000007exon5954842859548550-
GWHAAZE00000007exon5954703559547452-
GWHAAZE00000007CDS5955554359555839-
GWHAAZE00000007CDS5955503459555143-
GWHAAZE00000007CDS5955281959552856-
GWHAAZE00000007CDS5955217359552250-
GWHAAZE00000007CDS5955186459551917-
GWHAAZE00000007CDS5955148759551540-
GWHAAZE00000007CDS5955131359551414-
GWHAAZE00000007CDS5955106959551157-
GWHAAZE00000007CDS5955088059550983-
GWHAAZE00000007CDS5955070059550768-
GWHAAZE00000007CDS5955049359550608-
GWHAAZE00000007CDS5955031359550347-
GWHAAZE00000007CDS5955006859550210-
GWHAAZE00000007CDS5954842859548550-
GWHAAZE00000007CDS5954735059547452-
GWHAAZE00000007three_prime_UTR5954703559547349-
Transcript Sequence

Network for GWHGAAZE025320

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00180.21Iso_dh774872.40E-72
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00031IDH1, IDH2, icd Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Citrate cyclemap00020
Carbon fixation pathways in prokaryotesmap00720
Glutathione metabolismmap00480
Peroxisomemap04146

Gene Ontology

GO term OntologyName
GO:0006102biological_processisocitrate metabolic process
GO:0055114biological_processoxidation-reduction process
GO:0004450molecular_functionisocitrate dehydrogenase (NADP+) activity
GO:0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0000287molecular_functionmagnesium ion binding
GO:0051287molecular_functionNAD binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf19.250
SRR3591706second leaf11.057
SRR3591707mature leaf10.995
SRR3591708Shoot apex18.042
SRR3591709Stem21.470
SRR3591710White floral bud19.198
SRR3591711White flower28.936
SRR3591712Green floral bud16.910
SRR3591713Yellow flower30.018
SRP173429 SRR8316895Juvenile bud stage 14.490
SRR8316896Juvenile bud stage 25.254
SRR8316897Juvenile bud stage 9.037
SRR8316894Third green stage 8.543
SRR8316900Third green stage 25.928
SRR8316901Third green stage 21.440
SRR8316898Complete white stage 6.636
SRR8316899Complete white stage 18.170
SRR8316903Complete white stage 10.126
SRR8316902Silver flowering stage6.164
SRR8316904Silver flowering stage10.586
SRR8316905Silver flowering stage4.240
SRR8316906Gold flowering stage 15.728
SRR8316907Gold flowering stage 16.377
SRR8316908Gold flowering stage 14.598
SRP132670SRR6706286Control15.694
SRR6706287Light intensity 50%17.253
SRR6706288Light intensity 20%19.187
CNP0000432CNS0095592Slightly white alabastrum(diploid) 117.325
CNS0095593Slightly white alabastrum(diploid) 217.707
CNS0095594Slightly white alabastrum(diploid) 320.564
CNS0095595Whole white alabastrum(diploid) 216.739
CNS0095596Whole white alabastrum(diploid) 318.743
CNS0095597Whole white alabastrum(diploid) 413.082
CNS0095598Silvery flower (diploied) 116.985
CNS0095599Silvery flower (diploied) 214.911
CNS0095600Silvery flower (diploied) 320.490
CNS0095601Golden flower (diploid) 114.579
CNS0095602Golden flower (diploid) 216.824
CNS0095603Golden flower (diploid) 317.791
CNS0095604Slightly white alabastrum(tetraploid) 115.868
CNS0095605Slightly white alabastrum(tetraploid) 214.549
CNS0095606Slightly white alabastrum(tetraploid) 315.379
CNS0095607Whole white alabastrum(tetraploid) 111.830
CNS0095608Whole white alabastrum(tetraploid) 29.795
CNS0095609Whole white alabastrum(tetraploid) 316.819
CNS0095610Silvery flower (tetraploid) 119.563
CNS0095611Silvery flower (tetraploid) 222.901
CNS0095612Silvery flower (tetraploid) 318.559
CNS0095613Golden flower (tetraploid) 18.029
CNS0095614Golden flower (tetraploid) 217.416
CNS0095615Golden flower (tetraploid) 38.577
CRA001975CRR073297Stem 121.365
CRR073298Stem 218.991
CRR073299Stem 319.042
CRR073300Leaf 120.149
CRR073301Leaf 221.259
CRR073302Leaf 326.581
CRR073303Juvenile bud 120.320
CRR073304Juvenile bud 218.883
CRR073305Juvenile bud 323.354
CRR073306Third green 14.199
CRR073307Third green 23.789
CRR073308Third green 34.510
CRR073309Second white 112.071
CRR073310Second white 210.706
CRR073311Second white 38.491
CRR073312Silver flowering 16.131
CRR073313Silver flowering 27.393
CRR073314Silver flowering 39.388
CRR073315Gold flowering 112.827
CRR073316Gold flowering 215.683
CRR073317Gold flowering 38.679
CRR073318Tawny withering 117.699
CRR073319Tawny withering 212.776
CRR073320Tawny withering 314.844