Gene detail

Detail information of GWHGAAZE025324

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006357155.1	0	PREDICTED: high affinity nitrate transporter 2.7-like isoform X1 [Solanum tuberosum]
COG	YP_677931.1	2E-86	nitrate/nitrite transporter
Swissprot	tr\|Q9LYK2\|NRT27_ARATH	0	High affinity nitrate transporter 2.7
trEMBL	tr\|K4B7B1\|K4B7B1_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc02g067790.2.1}
TAIR10	AT5G14570.1	6E-132	high affinity nitrate transporter 2.7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	59640571	59642493	+
GWHAAZE00000007	mRNA	59640571	59642493	+
GWHAAZE00000007	exon	59640571	59641715	+
GWHAAZE00000007	exon	59642235	59642493	+
GWHAAZE00000007	CDS	59640571	59641715	+
GWHAAZE00000007	CDS	59642235	59642493	+

Transcript Sequence
>GWHTAAZE025358 ATGGAACCTCTCTCAAAAACCCAATCCACCACCTTCTCTCTCCCGGTGGATTCCGATCACAAGGCCACCGTATTCCGGCCACTCTTGATATCCCGGCCCCACATGCTCTCCTTCCACCTAGCATGGCTCTCTCTCTTCTGTTGCTTCTTCTCCACTTTTTCTATCCCTCCTCTTCTCCCCGTTATACGCGAGGACCTTGGCCTCACTGACACTGACGTCAGTGCAGCCGGCATAGCCTCCTTCGTGGGCTCCATCTTCTCCCGCCTTGCCATGGGCCCCACCTGTGACCTTGTGGGACCACGTATTGCCACCGCCACCCTCTCTCTCTTTACCGCCCCGGTGGTCCTCTCCACCGCCTTCATCTCCTCCCCAAAATCATTCATCCTCATCCGGTTCTTGATCGGATTCTCCTTAGCAAATTTTGTCTCGAGCCAATTCTGGATGAGCTCCATGTTCTCTGGCTCTGTCGTTGGCCAAGCTAACGGTGTAGCCGCTGGCTGGGCCAACGTGGGGTCCGGCCTGACCCAACTTATAATGCCATTATTATATTCTTACATTAATATCACCCTGGATGTTCCTGCTCATATTGCTTGGCGTACTGCCTTTGTTCTCCCGGCAGTACTCCAAGCAGTAACTGCATTTATGGTCCTAGCTTTTGGCCAGGACCTGCCAGATGGGAACTACAAACTCTTTAGTTCTTGTAAAACTAGCTGCGAGTCCTTAAAAGATGGGTTGGGAGTACTCTTTCAGGGGCTGAGGAACTACAGAGGGTGGATATTAGGTTTTACATACGGGTTCTGCTTCGGAGTGGAACTGACGACTGACAATATCATAGCAGAGTACTTCTACGACAGGTTTAATGTGAAGCTCGAGACAGCAGGGATGATAGCGGCGAGCTTTGGGCTGGCGAATATTGTATCGAGGCCGGCTGGCGGGGTGGTTTCTGACGTGATGGGGAGGAGGTTTGGGATGAGAGGGAGGCTGTGGAGCTTGTGGCTGGTTCAGACGGTGGCTGGGTTACTGTGTTTGTGGCTCGGCCAAGTTAACTCGCTTTGGGGTTCAATTGTGGTGATGTGTTGCTTCTCTTTTTTTGTTCAAGGTGCCTCTGGGCTTACGTTTGGCGTGGTTCCTTTTGTGTCCAAAAGATCAATGGGAGTGATATCAGGTTTGACAGGGAGTGGAGGGACAGTAGGGGCAGTGGTGACGCAGCTACTATTATTTTCAGGCTCTCAAAAATGGCCTACACAAACTGGGATTTCTCTAATGGGGGTCATGATGATTTTATGCACTATCCCAATCTCCTTCATATACTTTCCTCAATGGGGTGGCATGTTCTGTGGACCTTCAATTCATCTATACTCCATTAATGGCGATGAAGATCAACACTACCATTTGCTAAGTTAA

Network for GWHGAAZE025324

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07690.17	MFS_1	42	401	1.20E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02575	NRT, narK, nrtP, nasA	Nitrogen metabolism	map00910

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0016021	cellular_component	integral component of membrane
GO:0005887	cellular_component	integral component of plasma membrane
GO:0022857	molecular_function	transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.098
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.882
	SRR3591711	White flower	8.041
	SRR3591712	Green floral bud	6.565
	SRR3591713	Yellow flower	27.611
SRP173429	SRR8316895	Juvenile bud stage	0.124
	SRR8316896	Juvenile bud stage	0.055
	SRR8316897	Juvenile bud stage	0.545
	SRR8316894	Third green stage	0.531
	SRR8316900	Third green stage	7.736
	SRR8316901	Third green stage	3.620
	SRR8316898	Complete white stage	0.296
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.396
	SRR8316902	Silver flowering stage	1.594
	SRR8316904	Silver flowering stage	1.659
	SRR8316905	Silver flowering stage	0.796
	SRR8316906	Gold flowering stage	8.928
	SRR8316907	Gold flowering stage	14.053
	SRR8316908	Gold flowering stage	14.670
SRP132670	SRR6706286	Control	22.062
	SRR6706287	Light intensity 50%	19.122
	SRR6706288	Light intensity 20%	22.494
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.140
	CNS0095593	Slightly white alabastrum(diploid) 2	0.032
	CNS0095594	Slightly white alabastrum(diploid) 3	0.460
	CNS0095595	Whole white alabastrum(diploid) 2	0.368
	CNS0095596	Whole white alabastrum(diploid) 3	0.234
	CNS0095597	Whole white alabastrum(diploid) 4	0.814
	CNS0095598	Silvery flower (diploied) 1	0.421
	CNS0095599	Silvery flower (diploied) 2	0.747
	CNS0095600	Silvery flower (diploied) 3	2.539
	CNS0095601	Golden flower (diploid) 1	0.915
	CNS0095602	Golden flower (diploid) 2	4.225
	CNS0095603	Golden flower (diploid) 3	3.963
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.778
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.003
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.097
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.863
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.655
	CNS0095610	Silvery flower (tetraploid) 1	11.017
	CNS0095611	Silvery flower (tetraploid) 2	1.958
	CNS0095612	Silvery flower (tetraploid) 3	4.465
	CNS0095613	Golden flower (tetraploid) 1	55.861
	CNS0095614	Golden flower (tetraploid) 2	31.339
	CNS0095615	Golden flower (tetraploid) 3	7.882
CRA001975	CRR073297	Stem 1	0.167
	CRR073298	Stem 2	0.120
	CRR073299	Stem 3	0.109
	CRR073300	Leaf 1	0.760
	CRR073301	Leaf 2	0.657
	CRR073302	Leaf 3	0.896
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.411
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	1.535
	CRR073307	Third green 2	1.238
	CRR073308	Third green 3	0.830
	CRR073309	Second white 1	9.950
	CRR073310	Second white 2	7.568
	CRR073311	Second white 3	9.946
	CRR073312	Silver flowering 1	18.250
	CRR073313	Silver flowering 2	18.645
	CRR073314	Silver flowering 3	23.054
	CRR073315	Gold flowering 1	0.045
	CRR073316	Gold flowering 2	0.002
	CRR073317	Gold flowering 3	0.478
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.047
	CRR073320	Tawny withering 3	0.000