Gene detail

Detail information of GWHGAAZE025332

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009597313.1	3.7403E-75	PREDICTED: F-box only protein 8-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q8GXC7\|FBK50_ARATH	6E-26	F-box/kelch-repeat protein At3g06240
trEMBL	tr\|M0ZS94\|M0ZS94_SOLTU	1E-70	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400006971}
TAIR10	AT3G06240.1	6E-21	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	59755268	59758444	+
GWHAAZE00000007	mRNA	59755268	59758444	+
GWHAAZE00000007	exon	59755268	59756438	+
GWHAAZE00000007	exon	59757949	59758145	+
GWHAAZE00000007	exon	59758265	59758444	+
GWHAAZE00000007	CDS	59755268	59756438	+
GWHAAZE00000007	CDS	59757949	59758145	+
GWHAAZE00000007	CDS	59758265	59758444	+

Transcript Sequence
>GWHTAAZE025366 ATGGAGGCAAGGAGTGGTAATTGTGTTGTGCCAGAAGAAGTGGTGACCGAGATCCTATCAAGACTCCCTGTAAAATCGCTGCTGCGGTTCAAGTGCGTATGCAAGTTTTGGTACATTATAATAAAAAACCCTGCTTTTATAAACAAACACTTGAATCATTACCACAAAGAAAATGAGGCTCAGCTCCTTGTTTATCATTATATTCCCGAAATAGATAAATGTCGCTTTGCATTGTTCCCGGATGATACGCTTTCCATACATCAAGATCTTGATGATGTAGTAATTCCCCCATTTCTGGATGAGATTATGGGTCCCATTAACGGCTTATTTTTTCTTCACCATGGTATTTTTGATTGTTGGAATCGTGTTGCTTTATGGAACCCTGCTACCAGAGAGTTTAGGCCCCTCCCTGTACCTAATACCAACCTTCCACCAAATTGTGCTGCGTATTCGCATTACTTTGGATTTGGGTTTGATCCCTTGTCCAACGACTACAAATTGGTTTGGATCCAGATTGTGTGGGATGACAAAAAAGACGAGATTATTCATCGAGTTGTTGCACTGTACACACTTGGCAATGATACGTGGAGGCTTCTAGAACATTCTTTGGAATCGTTTCAATGCATCCAAATGTCTTTATCTAATTCCACCACATATTTGAATGGAGCGTATTACTGGCTGGCTCGTGACCAGGACATCAATAATTATACATTAGTTGTATTTGACATGAGCAGTGACATGTTCAGAGAGATAAACGGTCCCGATGATTCTAAATTGAAATACGGGGGTCTTGTGTTGTACCATGACTCACTTGCTGTGTTCCTTTACAAAAATTCATTTGCAACTGAAGCTTTGGGGGGATCTATCGAAGTGTGGGTAATGAAGCAAGAGGGGTATTGGACTAAAGATATTACCGTCGAGCCCCGTTTAGAAGTCGAGTGGCCTCTTGGGATTTGGAAGAAGGATGAGCTCTTCTTGGAAACTAGATCTTCGCAACTAGTCTTATATAACCCTTATACCCACGTAATTAGAAATATTGGAATCCAGGGAAAAGAGGACAGTGGTCTACTTTATGTATATATTTACAAGGAGAGCCTAGTTTCAGTCAAGGGAGGTAGCAAGGACTGGGTCCAGGATAAGTTGGTTGATGCACTACGAGAATTCTCGAAATGTTCCAGAGAGTTTAGGCCCCACCCTGTACCTAATACTATCCTTCCACCATATTGTGCTGCTTATACTCATTACTTTGGATTTGGGCCTGACCCCTTGACCGATGACTACAAGTTGATTCTGATCCGGATTGTGTGGGATGCCGAGAACCATGAGACTAGTAGTCCTACTGTTGACTTGTTGCATTGTACACTCTTGGACTTTAAGAAGTATCAATTAGTTTTATTTGACACGCGCAATGACTTGTTCAGAGAGAGAAAGGATCCAGATGTTTCTAAATCAAAAGACGGGGTCTTGTGTTATACCAAGACTCACTTTCCGTTTTCCCTTACAAAGATTCATTTGGAACTGTTGGGGGATCTACCGATGCGTGGGTAA

Network for GWHGAAZE025332

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	10	46	8.90E-10
PF08268.13	FBA_3	219	313	4.70E-09

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.206
	SRR3591707	mature leaf	0.872
	SRR3591708	Shoot apex	0.309
	SRR3591709	Stem	5.841
	SRR3591710	White floral bud	1.264
	SRR3591711	White flower	0.599
	SRR3591712	Green floral bud	3.596
	SRR3591713	Yellow flower	2.120
SRP173429	SRR8316895	Juvenile bud stage	3.103
	SRR8316896	Juvenile bud stage	8.754
	SRR8316897	Juvenile bud stage	2.989
	SRR8316894	Third green stage	1.929
	SRR8316900	Third green stage	4.406
	SRR8316901	Third green stage	4.553
	SRR8316898	Complete white stage	0.061
	SRR8316899	Complete white stage	1.425
	SRR8316903	Complete white stage	0.291
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.044
	SRR8316905	Silver flowering stage	0.094
	SRR8316906	Gold flowering stage	0.236
	SRR8316907	Gold flowering stage	0.164
	SRR8316908	Gold flowering stage	0.143
SRP132670	SRR6706286	Control	1.375
	SRR6706287	Light intensity 50%	1.417
	SRR6706288	Light intensity 20%	1.128
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.149
	CNS0095593	Slightly white alabastrum(diploid) 2	2.873
	CNS0095594	Slightly white alabastrum(diploid) 3	9.763
	CNS0095595	Whole white alabastrum(diploid) 2	5.983
	CNS0095596	Whole white alabastrum(diploid) 3	9.829
	CNS0095597	Whole white alabastrum(diploid) 4	7.611
	CNS0095598	Silvery flower (diploied) 1	0.050
	CNS0095599	Silvery flower (diploied) 2	0.484
	CNS0095600	Silvery flower (diploied) 3	0.417
	CNS0095601	Golden flower (diploid) 1	0.224
	CNS0095602	Golden flower (diploid) 2	0.166
	CNS0095603	Golden flower (diploid) 3	0.051
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.926
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.196
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.357
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.951
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.131
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.519
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.427
	CNS0095612	Silvery flower (tetraploid) 3	0.629
	CNS0095613	Golden flower (tetraploid) 1	0.052
	CNS0095614	Golden flower (tetraploid) 2	0.035
	CNS0095615	Golden flower (tetraploid) 3	0.392
CRA001975	CRR073297	Stem 1	2.828
	CRR073298	Stem 2	4.527
	CRR073299	Stem 3	2.790
	CRR073300	Leaf 1	1.688
	CRR073301	Leaf 2	1.634
	CRR073302	Leaf 3	0.885
	CRR073303	Juvenile bud 1	1.005
	CRR073304	Juvenile bud 2	1.594
	CRR073305	Juvenile bud 3	0.388
	CRR073306	Third green 1	0.693
	CRR073307	Third green 2	0.453
	CRR073308	Third green 3	0.411
	CRR073309	Second white 1	0.042
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.497
	CRR073313	Silver flowering 2	1.058
	CRR073314	Silver flowering 3	0.149
	CRR073315	Gold flowering 1	0.078
	CRR073316	Gold flowering 2	0.068
	CRR073317	Gold flowering 3	0.957
	CRR073318	Tawny withering 1	0.557
	CRR073319	Tawny withering 2	0.634
	CRR073320	Tawny withering 3	0.232