Gene detail

Detail information of GWHGAAZE025334

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002275628.1	0	PREDICTED: galactinol--sucrose galactosyltransferase [Vitis vinifera]
COG	YP_004464004.1	3E-49	raffinose synthase
Swissprot	tr\|Q8VWN6\|RFS_PEA	0	Galactinol--sucrose galactosyltransferase
trEMBL	tr\|D7TWK5\|D7TWK5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI34880.3}
TAIR10	AT5G40390.1	0	Raffinose synthase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	59782141	59787658	+
GWHAAZE00000007	mRNA	59782141	59787658	+
GWHAAZE00000007	exon	59782141	59782400	+
GWHAAZE00000007	exon	59782668	59783008	+
GWHAAZE00000007	exon	59783776	59784374	+
GWHAAZE00000007	exon	59785185	59785362	+
GWHAAZE00000007	exon	59786086	59786453	+
GWHAAZE00000007	exon	59787092	59787658	+
GWHAAZE00000007	CDS	59782141	59782400	+
GWHAAZE00000007	CDS	59782668	59783008	+
GWHAAZE00000007	CDS	59783776	59784374	+
GWHAAZE00000007	CDS	59785185	59785362	+
GWHAAZE00000007	CDS	59786086	59786453	+
GWHAAZE00000007	CDS	59787092	59787658	+

Transcript Sequence
>GWHTAAZE025368 ATGGCTCCGAGCTTGAGCAAAAGCGATGATTATGATACAACAAAAATGGGACACAAAGAGCCGATGATTACCTTAGAGGGAAGTTCAAATTTCCTGGCTAATGGTCACGTGGTTTTGTCCAGTGTTCCTTGCAATGTTACTATTGTTGCTCCGGCTACCACTGCTGGCTGCTTCGTCGGCTTTAACACTACAGAAGCCAAAAGCCGACATGTTGTTCCTATTGGCAAGCTCAAAAATATTCGCTTCATGAGTATTTTTAGGTTCAAGGTATGGTGGACCACACACTGGATCGGATCCGCCGGCGGCGACCTCGAGCACGAAACTCAGATGGTCCTACTTGACAAATCCGGCGACGGCCGGCCGTACGTTCTCCTTCTCCCGCTCTTAGAAGGCCCATTCCGGGCCTCTCTCCAGCCCGGCTCCGACGATTTCATCGATATCTGTGTAGAGAGCGGGTCCACAAAAGTCACAGGCGCCACCTTCGATAGCGTGCTCTACATCCACGCCGGGGAAGATCCTTACACTCTGGTTAAAGATGCGATGAAAATAGTTAGGGCTCATTTGGGAACCTTCAAGTTAATGGAAGAGAAATCTCCCCCAGGTATTGTGGACAAATTCGGATGGTGTACATGGGACGCATTTTACCTTACGGTGCACCCTCACGGCGTTTGGGACGGTGTCAAAGGCCTCGTCGACGGCGGCTGCCCGCCGGGACTCGTTCTTATCGACGATGGCTGGCAGTCGATTTCTCACGATGAAGATCCAGTTACGGAAGAAGGCATGAATAGAACTGCTGCAGGTGAGCAAATGCCCTGCCGGTTGATCAAATTCGAAGAGAATTACAAATTTAGGGACTATGAGAGTCCTAAAACATCCGGGTCGGGTAATAAGGGTATGGGTGCCTTCGTGAGGGATTTAAAGGATGAGTTTAAGAGTGTGGATTATGTGTATGTTTGGCACGCGCTTTGTGGGTATTGGGGCGGGTTAAGGCCCAACGCTCCCGGGTTACCTGAATCGAGGGTGGTCGGGCCCAAATTATCGCCCGGGGTAGAAATGACTATGGAAGATCTTGCTGTCGATAAAATCGTTAGTAACGGTGTTGGTTTGGTCCCACCGGAGATTGTTGATCAGATGTATGAAGGTCTTCACTCACACTTAGAGTCTGTTGGGATTGACGGAGTTAAAGTGGACGTTATTCATTTGTTGGAAATGTTGAGTGAAGATTATGGAGGGAGAGTAGAGCTAGCAAAAGCATACTACAAAGCATTGACAGCATCAGTGAGGAAGCACTTCAAAGGGAATGGGGTAATTGCTAGCATGGAGCACTGCAATGACTTCATGTTCCTTGGCACTGAGGCCATTGCCCTCGGTCGTGTTGGTGATGATTTTTGGTGCACTGATCCATCTGGTGACCCAAATGGCACATTTTGGCTACAAGGATGTCACATGGTCCACTGTGCTTACAATAGCCTGTGGATGGGCAATTTCATCCAGCCTGATTGGGACATGTTCCAGTCAACCCACCCCTGCGCTGAGTTCCATGCCGCCTCTCGGGCAATCTCCGGTGGACCAATCTATGTAAGTGACTCAGTGGGTAAGCACAACTTTGAGCTGCTCAGGACCCTAGTGGTGCCGGATGGTTCTATCCTCAGGTGCGAGAATTATGCCCTTCCGACCCGCGATTGTCTTTTTGAAGATCCACTTCATGATGGGAAAACCATGCTCAAAATTTGGAACTTGAACAAGTACACTGGAGTTCTTGGAGCATTCAACTGCCAAGGTGGGGGATGGTCCCGCGAATCCAGACGCAACAAATGCGCATCCGAATATTCCCACAGGGTGACCTCCATGGCAAGCCCAATGGACATTGAGTGGAAACATGGCAAACACTCCATCCCCATCGACCAAATCCAAATATTCGCACTCTACTTTTACCATGAGAAGAAACTCGTACTCTCAAAGCCAGATGACACCTTGGAGATCTCCCTCGAGCCCTTCAATTTTGAGCTCATAACCGTCTCTCCAATCAAAACCTTGCCAAACAATGTCCAATTTGCAGCCATTGGGTTGGTCAATATGCTCAACTCTGGTGGAGCCATCAAGGCTGTTGATGAGTGTGACAAGGATGGGACGTGTTTGGTTCGGGTTTCGGTTAAGGGGACCGGAGAAATGAGGGCTTTTGTTTCGCAGAAACCAAAGGTGATTCGAGTTGAAGGCGAAGAGGTTGAGTTCACTTATGAAGCGGACATGGTTGTGGTTCATGTGCCTTGGCCCAATTCTTCAAATTCATCTGTTATTGAGTACTTATTTTGA

Network for GWHGAAZE025334

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05691.13	Raffinose_syn	24	753	0

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06617	E2.4.1.82	Metabolic pathways	map01100
K06617	E2.4.1.82	Galactose metabolism	map00052

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.679
	SRR3591706	second leaf	7.919
	SRR3591707	mature leaf	18.682
	SRR3591708	Shoot apex	5.737
	SRR3591709	Stem	16.503
	SRR3591710	White floral bud	11.196
	SRR3591711	White flower	8.841
	SRR3591712	Green floral bud	8.460
	SRR3591713	Yellow flower	1.054
SRP173429	SRR8316895	Juvenile bud stage	2.871
	SRR8316896	Juvenile bud stage	2.686
	SRR8316897	Juvenile bud stage	1.781
	SRR8316894	Third green stage	0.791
	SRR8316900	Third green stage	1.090
	SRR8316901	Third green stage	1.230
	SRR8316898	Complete white stage	0.179
	SRR8316899	Complete white stage	3.616
	SRR8316903	Complete white stage	0.722
	SRR8316902	Silver flowering stage	0.513
	SRR8316904	Silver flowering stage	0.461
	SRR8316905	Silver flowering stage	0.205
	SRR8316906	Gold flowering stage	0.310
	SRR8316907	Gold flowering stage	0.130
	SRR8316908	Gold flowering stage	0.986
SRP132670	SRR6706286	Control	1.181
	SRR6706287	Light intensity 50%	1.258
	SRR6706288	Light intensity 20%	1.066
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.618
	CNS0095593	Slightly white alabastrum(diploid) 2	5.758
	CNS0095594	Slightly white alabastrum(diploid) 3	4.997
	CNS0095595	Whole white alabastrum(diploid) 2	2.572
	CNS0095596	Whole white alabastrum(diploid) 3	1.299
	CNS0095597	Whole white alabastrum(diploid) 4	2.466
	CNS0095598	Silvery flower (diploied) 1	5.305
	CNS0095599	Silvery flower (diploied) 2	5.420
	CNS0095600	Silvery flower (diploied) 3	3.122
	CNS0095601	Golden flower (diploid) 1	5.445
	CNS0095602	Golden flower (diploid) 2	5.067
	CNS0095603	Golden flower (diploid) 3	5.722
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.211
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.871
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.163
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.543
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.733
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.457
	CNS0095610	Silvery flower (tetraploid) 1	0.248
	CNS0095611	Silvery flower (tetraploid) 2	1.116
	CNS0095612	Silvery flower (tetraploid) 3	1.537
	CNS0095613	Golden flower (tetraploid) 1	0.254
	CNS0095614	Golden flower (tetraploid) 2	0.201
	CNS0095615	Golden flower (tetraploid) 3	0.918
CRA001975	CRR073297	Stem 1	7.307
	CRR073298	Stem 2	6.531
	CRR073299	Stem 3	4.662
	CRR073300	Leaf 1	5.337
	CRR073301	Leaf 2	7.573
	CRR073302	Leaf 3	3.041
	CRR073303	Juvenile bud 1	2.904
	CRR073304	Juvenile bud 2	1.291
	CRR073305	Juvenile bud 3	4.915
	CRR073306	Third green 1	2.450
	CRR073307	Third green 2	1.676
	CRR073308	Third green 3	2.138
	CRR073309	Second white 1	1.150
	CRR073310	Second white 2	0.360
	CRR073311	Second white 3	0.603
	CRR073312	Silver flowering 1	1.795
	CRR073313	Silver flowering 2	3.704
	CRR073314	Silver flowering 3	2.514
	CRR073315	Gold flowering 1	16.746
	CRR073316	Gold flowering 2	16.172
	CRR073317	Gold flowering 3	11.866
	CRR073318	Tawny withering 1	15.319
	CRR073319	Tawny withering 2	20.486
	CRR073320	Tawny withering 3	17.637