Gene detail

Detail information of GWHGAAZE025341

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009765528.1	0	PREDICTED: denticleless protein homolog [Nicotiana sylvestris]
COG	YP_003885555.1	6E-17	sigma 54 interacting domain-containing protein
Swissprot	tr\|Q8W1K8\|MUT11_CHLRE	8E-11	Protein Mut11
trEMBL	tr\|M1AY91\|M1AY91_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400032879}
TAIR10	AT3G27640.1	3E-158	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	59926912	59932841	-
GWHAAZE00000007	mRNA	59926912	59932841	-
GWHAAZE00000007	exon	59926912	59927114	-
GWHAAZE00000007	exon	59927198	59927291	-
GWHAAZE00000007	exon	59927788	59927836	-
GWHAAZE00000007	exon	59927911	59927978	-
GWHAAZE00000007	exon	59928055	59928123	-
GWHAAZE00000007	exon	59928206	59928290	-
GWHAAZE00000007	exon	59928761	59928840	-
GWHAAZE00000007	exon	59929567	59929648	-
GWHAAZE00000007	exon	59929765	59929841	-
GWHAAZE00000007	exon	59929933	59929996	-
GWHAAZE00000007	exon	59930157	59930244	-
GWHAAZE00000007	exon	59930352	59930448	-
GWHAAZE00000007	exon	59930941	59930979	-
GWHAAZE00000007	exon	59932132	59932196	-
GWHAAZE00000007	exon	59932313	59932421	-
GWHAAZE00000007	exon	59932557	59932669	-
GWHAAZE00000007	exon	59932775	59932841	-
GWHAAZE00000007	CDS	59932775	59932841	-
GWHAAZE00000007	CDS	59932557	59932669	-
GWHAAZE00000007	CDS	59932313	59932421	-
GWHAAZE00000007	CDS	59932132	59932196	-
GWHAAZE00000007	CDS	59930941	59930979	-
GWHAAZE00000007	CDS	59930352	59930448	-
GWHAAZE00000007	CDS	59930157	59930244	-
GWHAAZE00000007	CDS	59929933	59929996	-
GWHAAZE00000007	CDS	59929765	59929841	-
GWHAAZE00000007	CDS	59929567	59929648	-
GWHAAZE00000007	CDS	59928761	59928840	-
GWHAAZE00000007	CDS	59928206	59928290	-
GWHAAZE00000007	CDS	59928055	59928123	-
GWHAAZE00000007	CDS	59927911	59927978	-
GWHAAZE00000007	CDS	59927788	59927836	-
GWHAAZE00000007	CDS	59927198	59927291	-
GWHAAZE00000007	CDS	59926912	59927114	-

Transcript Sequence
>GWHTAAZE025375 ATGGAGAGCTCAAAGCCTCAATCTTTCTTTCAAGACATCAGATCAAGAGAGCTCAATGGTTTCAGAGTACGAAAGAGACCTTATATCGCCACTGAATCATCGGAATTTGATCAAATTGGAGCGGTCTCTGTCGAGCACGATGGTTCTAACGCACCTCCAATGGCCCTCTCTTTCTGCAAGACAAGTAAAAATTCACACATTCTTGCTGTGACCGATGAGGATGGTTACGTTAGCTTATTCAACACTCGATTGAACTTCCCCTCTTCGTCAACTTACCAACAAAATGCCGAGAAAGCTAGGGTTTGTGATTGGATTGCTCATGATAATGCTATATTTGATATATGTTGGATTAAGGAAGACTGTAATCTGTTAACAGCTTCTGGTGATCAAAGTATAAAGGTTTGGGATGTAAATGTAAAGAAATGCCTTGTTGCTTTGATAGGGCACACAGGAAGTGTAAAATCTCTCTGTTCCCATCCTACCAATAATGATCTCATTGTGTCTGGTTCAAGAGACGGATCATTTGCTCTGTGGGACTTGAGGAGTTCTAGAAGTAGCCAAGAGAAGTTTTGCATATCGCCAACTGCTGCCATCTCTGGGGCCCACATTTCAACTAAGGGAAAGCGTGTTAGGCGTGGAAAGGCTGCTTCCATGAGCATTACATCGGTTCTTTATCTAAAAGACGAGGTTTCCATTGCTACAGCTGGAGCAGTGGACAGCATTGTGAAGTTCTGGGATACAAGAAGCCTAAAAAGTCCTGTTGCTCAGGCCTGCCCTGATCCTGAATTATCAACTCAGAAGGAAAGAAGATTACATGGTATATCTAGCTTGTCCCAAGATAAAAATGGAGTGTTTCTTTCAGCTTCATGCATGGATAACAGAATATATCTCTATAATCTACTTCAGCTTGAGAAGGGGCCTGCAAAATCGTTCTGTGGATGCCGGATTGAATCATTCTTTGTAAAGGCAGCATTGAGCCCTGATGCAGCCCATATACTTAGTGGTTCTAGTGATGGAAATGCCTACCTATGGCAGGTAAACAAGCCTCAAGCAGATCCTACTATACTCAAAAGCCATGATGGAGAAGTTACAGCTGTAGATTGGTGCCTGTCTGAGATAGGGAAAATAGCAACTTCTTCTGATGATTTCACTGTTCGGTATTGGAACATCAACGGCTGTTGTTATTCAAAGACAAGATCTCCATCTTCCACCCGGAGGAGAGTAATGGCACTTCCAAAAATGGAACCAAACCAACTCACAGAATCAATTCCAATGCCGAAAATGAGTACACCCGAATCCCACAAGAAAAGAACCTCGTTTTGTTTAGATGTAGAAGAAACCTGTGAGAGAACACCTGAAGCTGCCTTTAAAAGCCCTTCTTCTGTTCTTAACCCTCCTTCCTCCTTGAAAAGAAAAACAATTTGCGATTACTTTTTGATGTCTTCATAA

Network for GWHGAAZE025341

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	105	136	0.035
PF00400.33	WD40	141	179	0.00021
PF00400.33	WD40	355	389	0.0085

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.711
	SRR3591706	second leaf	0.516
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	5.513
	SRR3591709	Stem	1.003
	SRR3591710	White floral bud	0.022
	SRR3591711	White flower	0.003
	SRR3591712	Green floral bud	0.255
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.956
	SRR8316896	Juvenile bud stage	0.553
	SRR8316897	Juvenile bud stage	0.522
	SRR8316894	Third green stage	0.302
	SRR8316900	Third green stage	0.170
	SRR8316901	Third green stage	0.224
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.068
	SRR8316903	Complete white stage	0.070
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.088
	SRR6706287	Light intensity 50%	0.180
	SRR6706288	Light intensity 20%	0.158
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.710
	CNS0095593	Slightly white alabastrum(diploid) 2	0.390
	CNS0095594	Slightly white alabastrum(diploid) 3	0.582
	CNS0095595	Whole white alabastrum(diploid) 2	0.350
	CNS0095596	Whole white alabastrum(diploid) 3	0.242
	CNS0095597	Whole white alabastrum(diploid) 4	0.019
	CNS0095598	Silvery flower (diploied) 1	0.380
	CNS0095599	Silvery flower (diploied) 2	0.591
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.042
	CNS0095602	Golden flower (diploid) 2	0.114
	CNS0095603	Golden flower (diploid) 3	0.113
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.529
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.584
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.814
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.249
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.058
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.037
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.034
	CNS0095612	Silvery flower (tetraploid) 3	0.066
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.287
	CRR073298	Stem 2	0.972
	CRR073299	Stem 3	0.532
	CRR073300	Leaf 1	0.167
	CRR073301	Leaf 2	0.078
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.102
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.158
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.487
	CRR073316	Gold flowering 2	0.271
	CRR073317	Gold flowering 3	0.029
	CRR073318	Tawny withering 1	0.483
	CRR073319	Tawny withering 2	0.969
	CRR073320	Tawny withering 3	0.986