Detail information of GWHGAAZE025343


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010316311.11.0218E-145PREDICTED: F-box/LRR-repeat protein 4 [Solanum lycopersicum]
Swissprottr|Q8RWU5|FBL3_ARATH0.00000004F-box/LRR-repeat protein 3
trEMBLtr|A0A022RXJ7|A0A022RXJ7_ERYGU3E-143Uncharacterized protein {ECO:0000313|EMBL:EYU44789.1}
TAIR10AT5G40470.14E-52RNI-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene5995749359958941-
GWHAAZE00000007mRNA5995749359958941-
GWHAAZE00000007exon5995749359958941-
GWHAAZE00000007CDS5995749359958941-
Transcript Sequence

Network for GWHGAAZE025343

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box5402.30E-06
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf12.816
SRR3591706second leaf5.759
SRR3591707mature leaf7.707
SRR3591708Shoot apex14.230
SRR3591709Stem51.331
SRR3591710White floral bud6.703
SRR3591711White flower6.763
SRR3591712Green floral bud6.222
SRR3591713Yellow flower3.170
SRP173429 SRR8316895Juvenile bud stage 3.825
SRR8316896Juvenile bud stage 5.694
SRR8316897Juvenile bud stage 2.491
SRR8316894Third green stage 2.045
SRR8316900Third green stage 5.457
SRR8316901Third green stage 4.605
SRR8316898Complete white stage 2.440
SRR8316899Complete white stage 7.663
SRR8316903Complete white stage 5.305
SRR8316902Silver flowering stage2.356
SRR8316904Silver flowering stage3.494
SRR8316905Silver flowering stage2.353
SRR8316906Gold flowering stage 4.632
SRR8316907Gold flowering stage 5.601
SRR8316908Gold flowering stage 6.469
SRP132670SRR6706286Control8.026
SRR6706287Light intensity 50%6.287
SRR6706288Light intensity 20%7.154
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.504
CNS0095593Slightly white alabastrum(diploid) 25.338
CNS0095594Slightly white alabastrum(diploid) 32.731
CNS0095595Whole white alabastrum(diploid) 23.583
CNS0095596Whole white alabastrum(diploid) 33.393
CNS0095597Whole white alabastrum(diploid) 44.510
CNS0095598Silvery flower (diploied) 13.794
CNS0095599Silvery flower (diploied) 24.319
CNS0095600Silvery flower (diploied) 35.356
CNS0095601Golden flower (diploid) 15.451
CNS0095602Golden flower (diploid) 26.579
CNS0095603Golden flower (diploid) 36.407
CNS0095604Slightly white alabastrum(tetraploid) 16.854
CNS0095605Slightly white alabastrum(tetraploid) 27.827
CNS0095606Slightly white alabastrum(tetraploid) 315.318
CNS0095607Whole white alabastrum(tetraploid) 17.103
CNS0095608Whole white alabastrum(tetraploid) 24.420
CNS0095609Whole white alabastrum(tetraploid) 36.859
CNS0095610Silvery flower (tetraploid) 16.484
CNS0095611Silvery flower (tetraploid) 29.751
CNS0095612Silvery flower (tetraploid) 39.896
CNS0095613Golden flower (tetraploid) 14.882
CNS0095614Golden flower (tetraploid) 27.658
CNS0095615Golden flower (tetraploid) 35.607
CRA001975CRR073297Stem 114.982
CRR073298Stem 214.206
CRR073299Stem 314.376
CRR073300Leaf 113.273
CRR073301Leaf 211.983
CRR073302Leaf 312.530
CRR073303Juvenile bud 111.682
CRR073304Juvenile bud 29.935
CRR073305Juvenile bud 311.533
CRR073306Third green 113.790
CRR073307Third green 210.453
CRR073308Third green 313.929
CRR073309Second white 116.945
CRR073310Second white 213.033
CRR073311Second white 312.761
CRR073312Silver flowering 17.840
CRR073313Silver flowering 25.712
CRR073314Silver flowering 37.993
CRR073315Gold flowering 16.755
CRR073316Gold flowering 28.333
CRR073317Gold flowering 36.856
CRR073318Tawny withering 121.439
CRR073319Tawny withering 212.041
CRR073320Tawny withering 333.055