Gene detail

Detail information of GWHGAAZE025349

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02050.1	2.5317E-157	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q6NQK2\|NAC8_ARATH	5E-79	NAC domain-containing protein 8
trEMBL	tr\|A0A068U0I6\|A0A068U0I6_COFCA	9E-158	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02050.1}
TAIR10	AT5G14490.1	6E-81	NAC domain containing protein 85

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	60033628	60036465	+
GWHAAZE00000007	mRNA	60033628	60036465	+
GWHAAZE00000007	exon	60033628	60033759	+
GWHAAZE00000007	exon	60033969	60034155	+
GWHAAZE00000007	exon	60034562	60035061	+
GWHAAZE00000007	exon	60035451	60035696	+
GWHAAZE00000007	exon	60036406	60036465	+
GWHAAZE00000007	CDS	60033628	60033759	+
GWHAAZE00000007	CDS	60033969	60034155	+
GWHAAZE00000007	CDS	60034562	60035061	+
GWHAAZE00000007	CDS	60035451	60035696	+
GWHAAZE00000007	CDS	60036406	60036465	+

Transcript Sequence
>GWHTAAZE025383 ACTTGGCTTGTTGATAGCAGAGGAATTGCAAGAAAAGTGAAAAATGCTACCCTTCCTTGTGTATATCAAATCAAAGACTGTGGGGCTCACCGCGAATGCCCAAATTGCCATTACCATATTGACAACAACGATGCATCTTATGAATGGCCCGGTCTACCTGCTGGCGTAAAATTTGATCCGTCTGATTTAGAGCTTGTAGAACATTTAGCTGCCAAATGTGGAGTGGGAAACTTAGAACCTCACATGTTCATCGATGAGTTCATCCCTACACTTGAAGAGGTTAATGGAATTTGCTGCAATCATCCCGAAAATCTCCCTGGTGCCAAAAAAGATGGAAGCAGTGTCCATTTCTTTCACAGAACTAGAAATGCATACGCAACCGGCCAAAGAAAGCGTCGCAAAATCGACAGTCAACAGAGTTCAACAAAGGAGAGTGTCCGTTGGCACAAAACAGGTAAGACCAAGCCCGTGATGGAAAATGGAGTCCAAAGGGGATTCAAGAAGATTATGGTTCTTTATGGAACTTCAGTAAAGGGTTCCAAGCCTGATAAATCCAACTGGGTTATGCACCAATACCATTTGGGAACTGACGAAGATGAAAAACAAGGCGAATACGTGGTCTCAAAGATTTTCTATCAGCAACAGAAGCAGAGCGAGAAGAATGAAAATCCAGTTATTGTTGAGGAAGCTGATACAGGGGTGTTGAGCCGAACTAGTCCAATGACTCCAAAGACAAATGATACTATTCCGCCTCGGCCAGGAAAGTTTGTCTCATCTGATGTTGTCACCGATGATTTTGCAATCCAGTTGCCTAGACAGGAAGCGGATCTTGAGCAGTATCCCTCTTGTTTAGCCGGTGAATCACAAGCTGCTGATGAAAATGGCATAGACGACCCATTGTTATGCAAAGAGATTCTTGAATCTTATACACCACTTGATGACTCTCATGGTTCTCTGTCTGCCTTTTTTCGCAACACTAACGATGGTCCAGGAGCAGATGGAAGTGGAAGTTTTGGATTCTCTGACCTTGAGAACATAGAACTGGATACTCCACCTGATTTGGCGGGCCACTGCGGATATAAGGTTTGCAAGGCCATTGGAGTTGGCCAGGAAGATAACGCCTAA

Network for GWHGAAZE025349

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	53	194	1.10E-21

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.955
	SRR3591706	second leaf	1.850
	SRR3591707	mature leaf	2.115
	SRR3591708	Shoot apex	4.048
	SRR3591709	Stem	11.485
	SRR3591710	White floral bud	2.233
	SRR3591711	White flower	2.714
	SRR3591712	Green floral bud	2.664
	SRR3591713	Yellow flower	3.109
SRP173429	SRR8316895	Juvenile bud stage	3.166
	SRR8316896	Juvenile bud stage	3.669
	SRR8316897	Juvenile bud stage	1.276
	SRR8316894	Third green stage	1.317
	SRR8316900	Third green stage	3.791
	SRR8316901	Third green stage	3.088
	SRR8316898	Complete white stage	0.878
	SRR8316899	Complete white stage	4.476
	SRR8316903	Complete white stage	0.643
	SRR8316902	Silver flowering stage	1.116
	SRR8316904	Silver flowering stage	0.696
	SRR8316905	Silver flowering stage	0.690
	SRR8316906	Gold flowering stage	1.744
	SRR8316907	Gold flowering stage	1.627
	SRR8316908	Gold flowering stage	1.493
SRP132670	SRR6706286	Control	4.105
	SRR6706287	Light intensity 50%	4.189
	SRR6706288	Light intensity 20%	3.757
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.064
	CNS0095593	Slightly white alabastrum(diploid) 2	5.168
	CNS0095594	Slightly white alabastrum(diploid) 3	2.689
	CNS0095595	Whole white alabastrum(diploid) 2	3.323
	CNS0095596	Whole white alabastrum(diploid) 3	2.379
	CNS0095597	Whole white alabastrum(diploid) 4	4.057
	CNS0095598	Silvery flower (diploied) 1	4.302
	CNS0095599	Silvery flower (diploied) 2	4.872
	CNS0095600	Silvery flower (diploied) 3	2.559
	CNS0095601	Golden flower (diploid) 1	3.620
	CNS0095602	Golden flower (diploid) 2	3.242
	CNS0095603	Golden flower (diploid) 3	3.787
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.866
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.646
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.179
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.649
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.219
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.950
	CNS0095610	Silvery flower (tetraploid) 1	3.072
	CNS0095611	Silvery flower (tetraploid) 2	4.137
	CNS0095612	Silvery flower (tetraploid) 3	1.905
	CNS0095613	Golden flower (tetraploid) 1	0.647
	CNS0095614	Golden flower (tetraploid) 2	2.991
	CNS0095615	Golden flower (tetraploid) 3	3.612
CRA001975	CRR073297	Stem 1	2.742
	CRR073298	Stem 2	3.626
	CRR073299	Stem 3	2.498
	CRR073300	Leaf 1	5.062
	CRR073301	Leaf 2	4.872
	CRR073302	Leaf 3	2.806
	CRR073303	Juvenile bud 1	3.018
	CRR073304	Juvenile bud 2	1.204
	CRR073305	Juvenile bud 3	2.904
	CRR073306	Third green 1	0.229
	CRR073307	Third green 2	0.795
	CRR073308	Third green 3	0.406
	CRR073309	Second white 1	0.871
	CRR073310	Second white 2	1.392
	CRR073311	Second white 3	1.313
	CRR073312	Silver flowering 1	0.324
	CRR073313	Silver flowering 2	0.093
	CRR073314	Silver flowering 3	0.584
	CRR073315	Gold flowering 1	3.387
	CRR073316	Gold flowering 2	4.495
	CRR073317	Gold flowering 3	1.840
	CRR073318	Tawny withering 1	1.969
	CRR073319	Tawny withering 2	1.742
	CRR073320	Tawny withering 3	5.906