Gene detail

Detail information of GWHGAAZE025359

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009609512.1	3.85472E-78	PREDICTED: uridine kinase-like protein 4, partial [Nicotiana tomentosiformis]
COG	NP_929440.1	5E-29	hypothetical protein plu2180
Swissprot	tr\|Q9LTY6\|UKL5_ARATH	2E-71	Probable uracil phosphoribosyltransferase
trEMBL	tr\|M1A9R0\|M1A9R0_SOLTU	5E-73	Uridine kinase {ECO:0000256\|RuleBase:RU003825}
TAIR10	AT3G27440.1	3E-52	uridine kinase-like 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	60140670	60141890	-
GWHAAZE00000007	mRNA	60140670	60141890	-
GWHAAZE00000007	exon	60141807	60141890	-
GWHAAZE00000007	exon	60141649	60141721	-
GWHAAZE00000007	exon	60141496	60141578	-
GWHAAZE00000007	exon	60140670	60141152	-
GWHAAZE00000007	CDS	60141807	60141890	-
GWHAAZE00000007	CDS	60141649	60141721	-
GWHAAZE00000007	CDS	60141496	60141578	-
GWHAAZE00000007	CDS	60140979	60141152	-
GWHAAZE00000007	three_prime_UTR	60140670	60140978	-

Transcript Sequence
>GWHTAAZE025393 ATGGAGAACGCATTAAGAGCATGTTGTAAGGGCATCAAAATTGGTAAAATCCTCATCCATCGCCAGGGTAACAATGGCAGGGAGTTGATCTACGAGAAGCTACCGGCAGACATTGCTAGCCGACATGTGCTATTGCTTGACCCTGTTCTTGCTACAGGAACTTCCGCGGTTAAAGCTATTACTCTCTTGCTCAGTAAAGGTGTACCAGAAAGTAACATCATTTTCCTTAACCTTATAGCAGCTCCTGAAGGAGTTCATGCTGTTTGTAAGAAATTCCCAAGGTTAAAAATTGTGACATCAGAGATTGATGTTTCGCTAAACAAGGATTTACATGTTATCCCAGGCATGGGGGAGTTTGGGGATCGCTATTTTGGAACCAACACCTTTTCAGCTCCGCTAAGAGGATCATCCTAGCCAGCACACCGATGAAACTTTTTGAAGGACGAGCTATGAATTTTCTTACCTTTTCCCCTTTATTCACCTCGGTGTTATAAGCTGCTCTTCGTGGAGAATAAAAAAAGAAGCACACTTCTTCATCTATGGAGGAGAAAGTTTTGTCCGATGTTCCCTTTCGAGTGTTATAAATACTCTTTGTTAAGATTTGAAGAGTAGCGTAAATTATGGCATGGTAGATGAAGTTTTGTTCGATGTAAGATATTTAATTAATGCCTCACTTTTATGAATAAAAGAAGTTATTACCTCTTCTAATGTAGGGGAGAAATT

Network for GWHGAAZE025359

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14681.7	UPRTase	1	126	1.40E-45

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00876	udk, UCK	Metabolic pathways	map01100
		Pyrimidine metabolism	map00240
		Drug metabolism - other enzymes	map00983

Gene Ontology

GO term	Ontology	Name
GO:0009116	biological_process	nucleoside metabolic process

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.130
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.228
	SRR3591710	White floral bud	3.335
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	26.739
	SRR3591713	Yellow flower	0.348
SRP173429	SRR8316895	Juvenile bud stage	9.489
	SRR8316896	Juvenile bud stage	25.909
	SRR8316897	Juvenile bud stage	15.109
	SRR8316894	Third green stage	8.479
	SRR8316900	Third green stage	43.515
	SRR8316901	Third green stage	40.768
	SRR8316898	Complete white stage	0.214
	SRR8316899	Complete white stage	2.018
	SRR8316903	Complete white stage	1.068
	SRR8316902	Silver flowering stage	0.959
	SRR8316904	Silver flowering stage	0.512
	SRR8316905	Silver flowering stage	0.374
	SRR8316906	Gold flowering stage	0.267
	SRR8316907	Gold flowering stage	1.034
	SRR8316908	Gold flowering stage	0.226
SRP132670	SRR6706286	Control	12.842
	SRR6706287	Light intensity 50%	14.709
	SRR6706288	Light intensity 20%	13.393
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	41.803
	CNS0095593	Slightly white alabastrum(diploid) 2	28.007
	CNS0095594	Slightly white alabastrum(diploid) 3	47.799
	CNS0095595	Whole white alabastrum(diploid) 2	55.275
	CNS0095596	Whole white alabastrum(diploid) 3	66.748
	CNS0095597	Whole white alabastrum(diploid) 4	59.742
	CNS0095598	Silvery flower (diploied) 1	2.214
	CNS0095599	Silvery flower (diploied) 2	1.292
	CNS0095600	Silvery flower (diploied) 3	0.664
	CNS0095601	Golden flower (diploid) 1	1.272
	CNS0095602	Golden flower (diploid) 2	0.588
	CNS0095603	Golden flower (diploid) 3	0.680
	CNS0095604	Slightly white alabastrum(tetraploid) 1	54.733
	CNS0095605	Slightly white alabastrum(tetraploid) 2	60.385
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.025
	CNS0095607	Whole white alabastrum(tetraploid) 1	73.799
	CNS0095608	Whole white alabastrum(tetraploid) 2	74.128
	CNS0095609	Whole white alabastrum(tetraploid) 3	53.013
	CNS0095610	Silvery flower (tetraploid) 1	1.985
	CNS0095611	Silvery flower (tetraploid) 2	0.561
	CNS0095612	Silvery flower (tetraploid) 3	1.903
	CNS0095613	Golden flower (tetraploid) 1	1.745
	CNS0095614	Golden flower (tetraploid) 2	0.445
	CNS0095615	Golden flower (tetraploid) 3	0.532
CRA001975	CRR073297	Stem 1	6.477
	CRR073298	Stem 2	8.633
	CRR073299	Stem 3	3.904
	CRR073300	Leaf 1	16.355
	CRR073301	Leaf 2	14.477
	CRR073302	Leaf 3	11.662
	CRR073303	Juvenile bud 1	9.569
	CRR073304	Juvenile bud 2	4.073
	CRR073305	Juvenile bud 3	1.145
	CRR073306	Third green 1	0.063
	CRR073307	Third green 2	0.969
	CRR073308	Third green 3	0.560
	CRR073309	Second white 1	0.455
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.101
	CRR073312	Silver flowering 1	1.025
	CRR073313	Silver flowering 2	0.356
	CRR073314	Silver flowering 3	0.280
	CRR073315	Gold flowering 1	0.493
	CRR073316	Gold flowering 2	0.427
	CRR073317	Gold flowering 3	0.091
	CRR073318	Tawny withering 1	1.141
	CRR073319	Tawny withering 2	2.047
	CRR073320	Tawny withering 3	1.212